DCSAU-Net: A Deeper and More Compact Split-Attention U-Net for Medical Image Segmentation

Last update: Dec 09, 2022

Related tags

Deep Learning DCSAU-Net

Overview

DCSAU-Net: A Deeper and More Compact Split-Attention U-Net for Medical Image Segmentation

By Qing Xu, Wenting Duan and Na He

Requirements

pytorch==1.10.0
pytorch-lightning==1.1.0
albumentations==0.3.2
seaborn
sklearn

Dataset

To apply the model on a custom dataset, the data tree should be constructed as:

    ├── data
          ├── images
                ├── image_1.png
                ├── image_2.png
                ├── image_n.png
          ├── masks
                ├── image_1.png
                ├── image_2.png
                ├── image_n.png

CSV generation

python data_split_csv.py --dataset your/data/path --size 0.9

Train

python train.py --dataset your/data/path --csvfile your/csv/path --loss dice --batch 16 --lr 0.001 --epoch 150

Evaluation

python eval_binary.py --dataset your/data/path --csvfile your/csv/path --model save_models/epoch_last.pth --debug True

Acknowledgement

The codes are modified from ResNeSt, U-Net

Owner

Qing Xu

GitHub Repository

Fuzzification helps developers protect the released, binary-only software from attackers who are capable of applying state-of-the-art fuzzing techniques

About Fuzzification Fuzzification helps developers protect the released, binary-only software from attackers who are capable of applying state-of-the-

[email protected])"> 55 Oct 25, 2022

Code for the TIP 2021 Paper "Salient Object Detection with Purificatory Mechanism and Structural Similarity Loss"

PurNet Project for the TIP 2021 Paper "Salient Object Detection with Purificatory Mechanism and Structural Similarity Loss" Abstract Image-based salie

4 Aug 25, 2022

Space Ship Simulator using python

FlyOver Basic space-ship simulator using python How to run? Just double click run.py What modules do i need? All modules that i currently using is bui

0 Oct 09, 2022

A Simplied Framework of GAN Inversion

Framework of GAN Inversion Introcuction You can implement your own inversion idea using our repo. We offer a full range of tuning settings (in hparams

13 Sep 27, 2022

This repo is for segmentation of T2 hyp regions in gliomas.

T2-Hyp-Segmentor This repo is for segmentation of T2 hyp regions in gliomas. By downloading the model from here you can use it to segment your T2w ima

1 Jan 18, 2022

An SE(3)-invariant autoencoder for generating the periodic structure of materials

Crystal Diffusion Variational AutoEncoder This software implementes Crystal Diffusion Variational AutoEncoder (CDVAE), which generates the periodic st

94 Dec 10, 2022

PyTorch implementation of "Image-to-Image Translation Using Conditional Adversarial Networks".

pix2pix-pytorch PyTorch implementation of Image-to-Image Translation Using Conditional Adversarial Networks. Based on pix2pix by Phillip Isola et al.

383 Dec 17, 2022

YOLOv5 🚀 is a family of object detection architectures and models pretrained on the COCO dataset

YOLOv5 🚀 is a family of object detection architectures and models pretrained on the COCO dataset, and represents Ultralytics open-source research int

73 Dec 16, 2022

Code for our paper "Graph Pre-training for AMR Parsing and Generation" in ACL2022

AMRBART An implementation for ACL2022 paper "Graph Pre-training for AMR Parsing and Generation". You may find our paper here (Arxiv). Requirements pyt

60 Jan 03, 2023

⚓ Eurybia monitor model drift over time and securize model deployment with data validation

View Demo · Documentation · Medium article 🔍 Overview Eurybia is a Python library which aims to help in : Detecting data drift and model drift Valida

172 Dec 27, 2022

The official code of "SCROLLS: Standardized CompaRison Over Long Language Sequences".

SCROLLS This repository contains the official code of the paper: "SCROLLS: Standardized CompaRison Over Long Language Sequences". Links Official Websi

39 Dec 23, 2022

Boostcamp AI Tech 3rd / Basic Paper reading w.r.t Embedding

Boostcamp AI Tech 3rd : Basic Paper Reading w.r.t Embedding TL;DR 1992년부터 2018년도까지 이루어진 word/sentence embedding의 중요한 줄기를 이루는 기초 논문 스터디를 진행하고자 합니다. 논

14 Nov 14, 2022

Controlling the MicriSpotAI robot from scratch

Abstract: The SpotMicroAI project is designed to be a low cost, easily built quadruped robot. The design is roughly based off of Boston Dynamics quadr

405 Jan 05, 2023

This package is for running the semantic SLAM algorithm using extracted planar surfaces from the received detection

Semantic SLAM This package can perform optimization of pose estimated from VO/VIO methods which tend to drift over time. It uses planar surfaces extra

125 Dec 02, 2022

PyTorch implementation for Score-Based Generative Modeling through Stochastic Differential Equations (ICLR 2021, Oral)

Score-Based Generative Modeling through Stochastic Differential Equations This repo contains a PyTorch implementation for the paper Score-Based Genera

757 Jan 04, 2023

A human-readable PyTorch implementation of "Self-attention Does Not Need O(n^2) Memory"

memory_efficient_attention.pytorch A human-readable PyTorch implementation of "Self-attention Does Not Need O(n^2) Memory" (Rabe&Staats'21). def effic

7 Dec 26, 2022

This is the code repository for the paper "Identification of the Generalized Condorcet Winner in Multi-dueling Bandits" (NeurIPS 2021).

Code Repository for the Paper "Identification of the Generalized Condorcet Winner in Multi-dueling Bandits" (To appear in: Proceedings of NeurIPS20

1 Oct 03, 2022

DCSAU-Net: A Deeper and More Compact Split-Attention U-Net for Medical Image Segmentation

Related tags

Overview

DCSAU-Net: A Deeper and More Compact Split-Attention U-Net for Medical Image Segmentation

Requirements

Dataset

CSV generation

Train

Evaluation

Acknowledgement

Owner

Qing Xu

Fuzzification helps developers protect the released, binary-only software from attackers who are capable of applying state-of-the-art fuzzing techniques

Code for the TIP 2021 Paper "Salient Object Detection with Purificatory Mechanism and Structural Similarity Loss"

Space Ship Simulator using python

A Simplied Framework of GAN Inversion

This repo is for segmentation of T2 hyp regions in gliomas.

An SE(3)-invariant autoencoder for generating the periodic structure of materials

PyTorch implementation of "Image-to-Image Translation Using Conditional Adversarial Networks".

YOLOv5 🚀 is a family of object detection architectures and models pretrained on the COCO dataset

Code for our paper "Graph Pre-training for AMR Parsing and Generation" in ACL2022

⚓ Eurybia monitor model drift over time and securize model deployment with data validation

The official code of "SCROLLS: Standardized CompaRison Over Long Language Sequences".

Boostcamp AI Tech 3rd / Basic Paper reading w.r.t Embedding

Controlling the MicriSpotAI robot from scratch

This package is for running the semantic SLAM algorithm using extracted planar surfaces from the received detection

PyTorch implementation for Score-Based Generative Modeling through Stochastic Differential Equations (ICLR 2021, Oral)

A human-readable PyTorch implementation of "Self-attention Does Not Need O(n^2) Memory"

This is the code repository for the paper "Identification of the Generalized Condorcet Winner in Multi-dueling Bandits" (NeurIPS 2021).

Language model Prompt And Query Archive

A collection of scripts I developed for personal and working projects.

Code for CVPR2021 paper 'Where and What? Examining Interpretable Disentangled Representations'.