Readings for "A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction."

Last update: Jan 05, 2023

Overview

Polypharmacy - DDI - Synergy Survey

The Survey Paper

This repository accompanies our survey paper A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction.

If you find the survey or this repository useful in your research, please consider citing our paper:

@inproceedings{poliddicombisurvey,
       title = {{A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction}},
       author = {Benedek Rozemberczki and Stephen Bonner and Andriy Nikolov and Michaël Ughetto and Sebastian Nilsson and Eliseo Papa},
       year = {2021}
}

License

Apache 2.0

Comments

✨ Add "Relational Gaifman Models" + dataset
Add "Efficient Learning of Relational Gaifman Models using Probabilistic Logic" and dataset links

It might make sense to refer to one of the papers with respect to "high-level" or "low-level" models (see related publications here: https://srlearn.github.io/relational-datasets/dataset_descriptions/drug_interactions/). For now, this pull request adds links to the 2019 PLP paper under "Datasets."
opened by hayesall 0

Releases(v_00002)

v_00002(Jan 3, 2022)
What's Changed

✨ Add "Relational Gaifman Models" + dataset by @hayesall in https://github.com/AstraZeneca/awesome-drug-pair-scoring/pull/1

New Contributors

@hayesall made their first contribution in https://github.com/AstraZeneca/awesome-drug-pair-scoring/pull/1

Full Changelog: https://github.com/AstraZeneca/awesome-drug-pair-scoring/compare/v_00001...v_00002
Source code(tar.gz)
Source code(zip)
v_00001(Nov 29, 2021)
The repository covers deep learning papers that solve these tasks:

Drug - Drug Interaction Prediction

Polypharmacy Side Effect Prediction

Drug Combination Synergy Scoring

Source code(tar.gz)
Source code(zip)

Owner

AstraZeneca

Data and AI: Unlocking new science insights

GitHub Repository

Code to reproduce the experiments from our NeurIPS 2021 paper " The Limitations of Large Width in Neural Networks: A Deep Gaussian Process Perspective"

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5 Dec 12, 2022

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UniSpeech The family of UniSpeech: UniSpeech (ICML 2021): Unified Pre-training for Self-Supervised Learning and Supervised Learning for ASR UniSpeech-

282 Jan 09, 2023

My 1st place solution at Kaggle Hotel-ID 2021

1st place solution at Kaggle Hotel-ID My 1st place solution at Kaggle Hotel-ID to Combat Human Trafficking 2021. https://www.kaggle.com/c/hotel-id-202

18 Aug 19, 2022

Blender Add-on that sets a Material's Base Color to one of Pantone's Colors of the Year

Blender PCOY (Pantone Color of the Year) MCMC (Mid-Century Modern Colors) HG71 (House & Garden Colors 1971) Blender Add-ons That Assign a Custom Color

15 Nov 20, 2022

Implementation of DocFormer: End-to-End Transformer for Document Understanding, a multi-modal transformer based architecture for the task of Visual Document Understanding (VDU)

DocFormer - PyTorch Implementation of DocFormer: End-to-End Transformer for Document Understanding, a multi-modal transformer based architecture for t

171 Jan 06, 2023

Official implementation of the RAVE model: a Realtime Audio Variational autoEncoder

589 Jan 02, 2023

Implementations of CNNs, RNNs, GANs, etc

Tensorflow Programs and Tutorials This repository will contain Tensorflow tutorials on a lot of the most popular deep learning concepts. It'll also co

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Diabetes-Feature-Engineering - A machine learning model that can predict whether people have diabetes when their characteristics are specified

Diabetes-Feature-Engineering Aim Developing a machine learning model that can pr

0 Feb 23, 2022

Code for "LoRA: Low-Rank Adaptation of Large Language Models"

LoRA: Low-Rank Adaptation of Large Language Models This repo contains the implementation of LoRA in GPT-2 and steps to replicate the results in our re

394 Jan 08, 2023

ZeroGen: Efficient Zero-shot Learning via Dataset Generation

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31 Dec 30, 2022

This repository is an implementation of paper : Improving the Training of Graph Neural Networks with Consistency Regularization

CRGNN Paper ： Improving the Training of Graph Neural Networks with Consistency Regularization Environments Implementing environment: GeForce RTX™ 3090

28 Dec 09, 2022

Readings for "A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction."

Related tags

Overview

Polypharmacy - DDI - Synergy Survey

The Survey Paper

Contents

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Comments

✨ Add "Relational Gaifman Models" + dataset

Releases(v_00002)

v_00002(Jan 3, 2022)

What's Changed

New Contributors

v_00001(Nov 29, 2021)

Owner

AstraZeneca

Code to reproduce the experiments from our NeurIPS 2021 paper " The Limitations of Large Width in Neural Networks: A Deep Gaussian Process Perspective"

Unified Pre-training for Self-Supervised Learning and Supervised Learning for ASR

My 1st place solution at Kaggle Hotel-ID 2021

Blender Add-on that sets a Material's Base Color to one of Pantone's Colors of the Year

Implementation of DocFormer: End-to-End Transformer for Document Understanding, a multi-modal transformer based architecture for the task of Visual Document Understanding (VDU)

Official implementation of the RAVE model: a Realtime Audio Variational autoEncoder

Implementations of CNNs, RNNs, GANs, etc

Diabetes-Feature-Engineering - A machine learning model that can predict whether people have diabetes when their characteristics are specified

Code for "LoRA: Low-Rank Adaptation of Large Language Models"

ZeroGen: Efficient Zero-shot Learning via Dataset Generation

This repository is an implementation of paper : Improving the Training of Graph Neural Networks with Consistency Regularization

Range Image-based LiDAR Localization for Autonomous Vehicles Using Mesh Maps

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Node Dependent Local Smoothing for Scalable Graph Learning

Multi Camera Calibration

4K videos with annotated masks in our ICCV2021 paper 'Internal Video Inpainting by Implicit Long-range Propagation'.

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Lightweight Cuda Renderer with Python Wrapper.

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