Readings for "A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction."

Last update: Jan 05, 2023

Overview

Polypharmacy - DDI - Synergy Survey

The Survey Paper

This repository accompanies our survey paper A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction.

If you find the survey or this repository useful in your research, please consider citing our paper:

@inproceedings{poliddicombisurvey,
       title = {{A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction}},
       author = {Benedek Rozemberczki and Stephen Bonner and Andriy Nikolov and Michaël Ughetto and Sebastian Nilsson and Eliseo Papa},
       year = {2021}
}

License

Apache 2.0

Comments

✨ Add "Relational Gaifman Models" + dataset
Add "Efficient Learning of Relational Gaifman Models using Probabilistic Logic" and dataset links

It might make sense to refer to one of the papers with respect to "high-level" or "low-level" models (see related publications here: https://srlearn.github.io/relational-datasets/dataset_descriptions/drug_interactions/). For now, this pull request adds links to the 2019 PLP paper under "Datasets."
opened by hayesall 0

Releases(v_00002)

v_00002(Jan 3, 2022)
What's Changed

✨ Add "Relational Gaifman Models" + dataset by @hayesall in https://github.com/AstraZeneca/awesome-drug-pair-scoring/pull/1

New Contributors

@hayesall made their first contribution in https://github.com/AstraZeneca/awesome-drug-pair-scoring/pull/1

Full Changelog: https://github.com/AstraZeneca/awesome-drug-pair-scoring/compare/v_00001...v_00002
Source code(tar.gz)
Source code(zip)
v_00001(Nov 29, 2021)
The repository covers deep learning papers that solve these tasks:

Drug - Drug Interaction Prediction

Polypharmacy Side Effect Prediction

Drug Combination Synergy Scoring

Source code(tar.gz)
Source code(zip)

Owner

AstraZeneca

Data and AI: Unlocking new science insights

GitHub Repository

Only works with the dashboard version / branch of jesse

Jesse optuna Only works with the dashboard version / branch of jesse. The config.yml should be self-explainatory. Installation # install from git pip

8 Dec 04, 2022

Projecting interval uncertainty through the discrete Fourier transform

Projecting interval uncertainty through the discrete Fourier transform This repo

1 Mar 02, 2022

Official implementation of ACTION-Net: Multipath Excitation for Action Recognition (CVPR'21).

ACTION-Net Official implementation of ACTION-Net: Multipath Excitation for Action Recognition (CVPR'21). Getting Started EgoGesture data folder struct

171 Dec 26, 2022

Code for paper: Group-CAM: Group Score-Weighted Visual Explanations for Deep Convolutional Networks

Group-CAM By Zhang, Qinglong and Rao, Lu and Yang, Yubin [State Key Laboratory for Novel Software Technology at Nanjing University] This repo is the o

98 Nov 16, 2022

implicit displacement field

Geometry-Consistent Neural Shape Representation with Implicit Displacement Fields [project page][paper][cite] Geometry-Consistent Neural Shape Represe

100 Dec 19, 2022

Elucidating Robust Learning with Uncertainty-Aware Corruption Pattern Estimation

Elucidating Robust Learning with Uncertainty-Aware Corruption Pattern Estimation Introduction 📋 Official implementation of Explainable Robust Learnin

6 Apr 19, 2022

Code for the paper "Query Embedding on Hyper-relational Knowledge Graphs"

Query Embedding on Hyper-Relational Knowledge Graphs This repository contains the code used for the experiments in the paper Query Embedding on Hyper-

19 Jul 26, 2022

Public repo for the ICCV2021-CVAMD paper "Is it Time to Replace CNNs with Transformers for Medical Images?"

Is it Time to Replace CNNs with Transformers for Medical Images? Accepted at ICCV-2021: Workshop on Computer Vision for Automated Medical Diagnosis (C

80 Dec 27, 2022

Fast algorithms to compute an approximation of the minimal volume oriented bounding box of a point cloud in 3D.

ApproxMVBB Status Build UnitTests Homepage Fast algorithms to compute an approximation of the minimal volume oriented bounding box of a point cloud in

390 Dec 31, 2022

ROCKET: Exceptionally fast and accurate time series classification using random convolutional kernels

ROCKET + MINIROCKET ROCKET: Exceptionally fast and accurate time series classification using random convolutional kernels. Data Mining and Knowledge D

298 Dec 26, 2022

[WACV 2022] Contextual Gradient Scaling for Few-Shot Learning

CxGrad - Official PyTorch Implementation Contextual Gradient Scaling for Few-Shot Learning Sanghyuk Lee, Seunghyun Lee, and Byung Cheol Song In WACV 2

4 Dec 05, 2022

Python script that takes an Impulse response .wav and a input .wav to demonstrate audio convolution.

convolver Python script that takes an Impulse response .wav and a input .wav to demonstrate audio convolution. Created by Sean Higley

1 Feb 23, 2022

Readings for "A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction."

Polypharmacy - DDI - Synergy Survey The Survey Paper This repository accompanies our survey paper A Unified View of Relational Deep Learning for Polyp

79 Jan 05, 2023

Readings for "A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction."

Related tags

Overview

Polypharmacy - DDI - Synergy Survey

The Survey Paper

Contents

You might also like...

Comments

✨ Add "Relational Gaifman Models" + dataset

Releases(v_00002)

v_00002(Jan 3, 2022)

What's Changed

New Contributors

v_00001(Nov 29, 2021)

Owner

AstraZeneca

Only works with the dashboard version / branch of jesse

Projecting interval uncertainty through the discrete Fourier transform

Official implementation of ACTION-Net: Multipath Excitation for Action Recognition (CVPR'21).

Code for paper: Group-CAM: Group Score-Weighted Visual Explanations for Deep Convolutional Networks

implicit displacement field

Elucidating Robust Learning with Uncertainty-Aware Corruption Pattern Estimation

Code for the paper "Query Embedding on Hyper-relational Knowledge Graphs"

Public repo for the ICCV2021-CVAMD paper "Is it Time to Replace CNNs with Transformers for Medical Images?"

Fast algorithms to compute an approximation of the minimal volume oriented bounding box of a point cloud in 3D.

ROCKET: Exceptionally fast and accurate time series classification using random convolutional kernels

[WACV 2022] Contextual Gradient Scaling for Few-Shot Learning

Python script that takes an Impulse response .wav and a input .wav to demonstrate audio convolution.

Readings for "A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction."

✂️ EyeLipCropper is a Python tool to crop eyes and mouth ROIs of the given video.

For auto aligning, cropping, and scaling HR and LR images for training image based neural networks

MMGeneration is a powerful toolkit for generative models, based on PyTorch and MMCV.

Deep Learning and Reinforcement Learning Library for Scientists and Engineers 🔥

Implémentation en pyhton de l'article Depixelizing pixel art de Johannes Kopf et Dani Lischinski

StarGAN-ZSVC: Unofficial PyTorch Implementation

[AAAI-2022] Official implementations of MCL: Mutual Contrastive Learning for Visual Representation Learning