Rethinking the U-Net architecture for multimodal biomedical image segmentation

Overview

MultiResUNet

Rethinking the U-Net architecture for multimodal biomedical image segmentation

This repository contains the original implementation of "MultiResUNet : Rethinking the U-Net architecture for multimodal biomedical image segmentation" in Keras (Tensorflow as backend).

Paper

MultiResUNet has been published in Neural Networks

Ibtehaz, Nabil, and M. Sohel Rahman. "MultiResUNet: Rethinking the U-Net architecture for multimodal biomedical image segmentation." Neural Networks 121 (2020): 74-87.

Overview

In this project we take motivations from the phenomenal U-Net architecture for biomedical image segmentation and take an attempt to improve the already outstanding network.

In order to incorporate multiresolution analysis, taking inspiration from Inception family networks, we propose the following MultiRes block, and replace the pair of convolutional layer pairs in the original U-Net with it. This configuration basically is derived from factorizing 5x5 and 7x7 convolution operations to 3x3 ones, and reusing them to obtain results from 3x3, 5x5 and 7x7 convolution operations simultaneously. Moreover, a residual path is also added.

Consequnetly, to elleviate the likely semantic distance between Encoder and Decoder networks, we introduce Res Paths. We include additional convolutions along the shortcut path, in proportionate to the expected gap between the two corresponding layers.

Therefore, with the fusion of MultiRes blocks and Res paths, we obtain the proposed architecture MultiResUNet.

Codes

The model architecture codes can be found in

Demo

A demo can be found in here

License

License

MIT license

Citation Request

If you use MultiResUNet in your project, please cite the following paper

@article{ibtehaz2020multiresunet,
  title={MultiResUNet: Rethinking the U-Net architecture for multimodal biomedical image segmentation},
  author={Ibtehaz, Nabil and Rahman, M Sohel},
  journal={Neural Networks},
  volume={121},
  pages={74--87},
  year={2020},
  publisher={Elsevier}
}
Owner
Nabil Ibtehaz
Computerphile
Nabil Ibtehaz
Cancer metastasis detection with neural conditional random field (NCRF)

NCRF Prerequisites Data Whole slide images Annotations Patch images Model Training Testing Tissue mask Probability map Tumor localization FROC evaluat

Baidu Research 731 Jan 01, 2023
The PyTorch implementation of DiscoBox: Weakly Supervised Instance Segmentation and Semantic Correspondence from Box Supervision.

DiscoBox: Weakly Supervised Instance Segmentation and Semantic Correspondence from Box Supervision The PyTorch implementation of DiscoBox: Weakly Supe

Shiyi Lan 1 Oct 23, 2021
Automatic deep learning for image classification.

AutoDL AutoDL automates machine learning tasks enabling you to easily achieve strong predictive performance in your applications. With just a few line

wenqi 2 Oct 12, 2022
Hysterese plugin with two temperature offset areas

craftbeerpi4 plugin OffsetHysterese Temperatur-Steuerungs-Plugin mit zwei tempereaturbereich abhängigen Offsets. Installation sudo pip3 install https:

HappyHibo 1 Dec 21, 2021
Torch-mutable-modules - Use in-place and assignment operations on PyTorch module parameters with support for autograd

Torch Mutable Modules Use in-place and assignment operations on PyTorch module p

Kento Nishi 7 Jun 06, 2022
CS50's Introduction to Artificial Intelligence Test Scripts

CS50's Introduction to Artificial Intelligence Test Scripts 🤷‍♂️ What's this? 🤷‍♀️ This repository contains Python scripts to automate tests for mos

Jet Kan 2 Dec 28, 2022
Multi-Content GAN for Few-Shot Font Style Transfer at CVPR 2018

MC-GAN in PyTorch This is the implementation of the Multi-Content GAN for Few-Shot Font Style Transfer. The code was written by Samaneh Azadi. If you

Samaneh Azadi 422 Dec 04, 2022
Real-time ground filtering algorithm of cloud points acquired using Terrestrial Laser Scanner (TLS)

This repository contains tools to simulate the ground filtering process of a registered point cloud. The repository contains two filtering methods. The first method uses a normal vector, and fit to p

5 Aug 25, 2022
PyTorchVideo is a deeplearning library with a focus on video understanding work

PyTorchVideo is a deeplearning library with a focus on video understanding work. PytorchVideo provides resusable, modular and efficient components needed to accelerate the video understanding researc

Facebook Research 2.7k Jan 07, 2023
Pytorch implementation of DeePSiM

Pytorch implementation of DeePSiM

1 Nov 05, 2021
Resources for our AAAI 2022 paper: "LOREN: Logic-Regularized Reasoning for Interpretable Fact Verification".

LOREN Resources for our AAAI 2022 paper (pre-print): "LOREN: Logic-Regularized Reasoning for Interpretable Fact Verification". DEMO System Check out o

Jiangjie Chen 37 Dec 27, 2022
Convolutional neural network web app trained to track our infant’s sleep schedule using our Google Nest camera.

Machine Learning Sleep Schedule Tracker What is it? Convolutional neural network web app trained to track our infant’s sleep schedule using our Google

g-parki 7 Jul 15, 2022
⚖️🔁🔮🕵️‍♂️🦹🖼️ Code for *Measuring the Contribution of Multiple Model Representations in Detecting Adversarial Instances* paper.

Measuring the Contribution of Multiple Model Representations in Detecting Adversarial Instances This repository contains the code for Measuring the Co

Daniel Steinberg 0 Nov 06, 2022
A framework for GPU based high-performance medical image processing and visualization

FAST is an open-source cross-platform framework with the main goal of making it easier to do high-performance processing and visualization of medical images on heterogeneous systems utilizing both mu

Erik Smistad 315 Dec 30, 2022
Normalizing Flows with a resampled base distribution

Resampling Base Distributions of Normalizing Flows Normalizing flows are a popular class of models for approximating probability distributions. Howeve

Vincent Stimper 24 Nov 03, 2022
Bayesian algorithm execution (BAX)

Bayesian Algorithm Execution (BAX) Code for the paper: Bayesian Algorithm Execution: Estimating Computable Properties of Black-box Functions Using Mut

Willie Neiswanger 38 Dec 08, 2022
Turning SymPy expressions into PyTorch modules.

sympytorch A micro-library as a convenience for turning SymPy expressions into PyTorch Modules. All SymPy floats become trainable parameters. All SymP

Patrick Kidger 89 Dec 13, 2022
Explainer for black box models that predict molecule properties

Explaining why that molecule exmol is a package to explain black-box predictions of molecules. The package uses model agnostic explanations to help us

White Laboratory 172 Dec 19, 2022
Similarity-based Gray-box Adversarial Attack Against Deep Face Recognition

Similarity-based Gray-box Adversarial Attack Against Deep Face Recognition Introduction Run attack: SGADV.py Objective function: foolbox/attacks/gradi

1 Jul 18, 2022
Implementation of ICLR 2020 paper "Revisiting Self-Training for Neural Sequence Generation"

Self-Training for Neural Sequence Generation This repo includes instructions for running noisy self-training algorithms from the following paper: Revi

Junxian He 45 Dec 31, 2022