Boundary-aware Transformers for Skin Lesion Segmentation

Overview

Boundary-aware Transformers for Skin Lesion Segmentation

Introduction

This is an official release of the paper Boundary-aware Transformers for Skin Lesion Segmentation.

Boundary-aware Transformers for Skin Lesion Segmentation,
Jiacheng Wang, Yueming Jin, Shuntian Cai, Hongzhi Xu, Pheng-Ann Heng, Jing Qin, Liansheng Wang
In: Medical Image Computing and Computer Assisted Intervention (MICCAI), 2021
[arXiv][Bibetex]

News

  • [11/15 2021] We have released the point map data.
  • [11/08 2021] We have released the training / testing codes.

Code List

  • Network
  • Pre-processing
  • Training Codes
  • MS

For more details or any questions, please feel easy to contact us by email ^_^

Results

Usage

Dataset

Please download the dataset from ISIC challenge.

Pre-processing

Please run:

$ python src/ISBI_resize.py
$ python src/point_gen.py

Point Maps

For your convenience, we release the processed maps and the dataset division.

Please download them from Baidu Disk. Code:kmqr.

The file names are equal to the original image names.

Training and testing

TODO

  1. We will improve the network to give a more powerful and simple lesion segmentation framework.

  2. The weights will be uploaded before next month.

Citation

If you find BAT useful in your research, please consider citing:

@inproceedings{wang2021boundary,
  title={Boundary-Aware Transformers for Skin Lesion Segmentation},
  author={Wang, Jiacheng and Wei, Lan and Wang, Liansheng and Zhou, Qichao and Zhu, Lei and Qin, Jing},
  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages={206--216},
  year={2021},
  organization={Springer}
}
Owner
Jiacheng Wang
Medical Imaging Processing
Jiacheng Wang
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