SNV Pipeline SNV calling pipeline developed explicitly to process individual or trio vcf files obtained from Illumina based pipeline (grch37/grch38).

First steps with Python in Life Sciences This course material is part of the "First Steps with Python in Life Science" three-day course of SIB-trainin

Create postgres tables from CSV files This first section is only relate to creating tables from CSV files using postgres container alone. Just one of

beavis Pandas and Dask test helper methods with beautiful error messages. test helpers These test helper methods are meant to be used in test suites.

Sentiment analysis on streaming twitter data using Spark Structured Streaming & Python This project is a good starting point for those who have little

About The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficien

mapa 🌍 Create 3d-printable STLs from satellite elevation data Installation pip install mapa Usage mapa uses numpy and numba under the hood to crunch

Purpose: This is integrate bus data from a variety of sources such as: csv, json api, sensor data ... into Relational Database (batch processing and r

PyIOmica (pyiomica) This repository contains PyIOmica, a Python package that provides bioinformatics utilities for analyzing (dynamic) omics datasets.

tree-SNE t-SNE and hierarchical clustering are popular methods of exploratory data analysis, particularly in biology. Building on recent advances in s

MidTerm Project for the Data Analysis FT Bootcamp, Adam Tycner and Florent ZAHOUI Hallo

unipipeline simple way to build the declarative and distributed data pipelines. Why you should use it Declarative strict config Scaffolding Fully type

Overview Welcome to the Step-X repository. This repo is dedicated to the data extraction and manipulation of the World Bank's database called STEP. Be

Wafer Fault Detection Problem Statement: Wafer (In electronics), also called a slice or substrate, is a thin slice of semiconductor, such as a crystal

KPACUBO KPACUBO is a set Jupyter notebooks focused on the best practices in both software development and data science, namely, code reuse, explicit d

SymPy See the AUTHORS file for the list of authors. And many more people helped on the SymPy mailing list, reported bugs, helped organize SymPy's part

VevestaX Track failed and successful experiments as well as features. VevestaX is an open source Python package for ML Engineers and Data Scientists.

How Long Does It Take Ordinary People To "Get Good" At Chess? TL;DR: According to 5.5 years of data from 2.3 million players and 450 million games, mo

This is an example of how to automate Ridit Analysis for a dataset with large amount of questions and many item attributes

Bayesian inference in HSMMs and HMMs This is a Python library for approximate unsupervised inference in Bayesian Hidden Markov Models (HMMs) and expli