Full automated data pipeline using docker images

Overview

Create postgres tables from CSV files

This first section is only relate to creating tables from CSV files using postgres container alone. Just one of my experiments. If you interest, you can just follow these steps (only if your working environment support bash):

sh scripts/prep.sh

The prep.sh will handle everything for you by doing follwing:

# Start postgres db container
docker-compose -f postgres.yaml up -d
# Sleep to make sure the container is fully up running
sleep 3 

# I have problem with mouting csv files via docker compose, so here we go
# Copy csv and setup.sql to create required tables
docker cp ./csv/ my_postgres:
docker cp ./scripts/setup.sql my_postgres:setup.sql

# Execute the script in postgres db
docker exec -it my_postgres psql -p5432 --dbname=postgres --username=postgres --file=setup.sql 

# Shutdown the container
docker-compose -f postgres.yaml down --remove-orphans

I had problem with mount volumn that I can't mount the files under csv and scripts folders. Which still can be improved with a proper mount. But let's skip it for now to save time.

Initial Setup/Start Airflow container

This section will use a separate docker-compose.yaml than the above test. It will be relate due to the fact that we want to use airflow to schedule the tasks above (create table and load data). To do so, do the following. First prepare folders. You can call a new folder specifically for this if you want.

# (optional) mkdir airflow && cd airflow
mkdir ./dags ./logs ./plugins

Next we need the airflow docker-compose.yaml in our airflow directory

curl -O https://airflow.apache.org/docs/apache-airflow/stable/docker-compose.yaml

Next make sure we will have a proper permission to initial Airflow

.env ">
echo -e "AIRFLOW_UID=$(id -u)\nAIRFLOW_GID=0" > .env

Then we must initial Airflow instance

docker-compose up airflow-init

Wait until the initial finished then (you can use -d to detach if you want)

docker-compose up

Now you will be able to connect to Airflow GUI via http://localhost:8080/

Create Airflow DAG task

First thing, you need to setup connection for postgres database. Go to tab Admin > Connection > +, wow you have to fill details of the connection:

Connection Id: postgres_default
Connection Type: 'Postgres'
Host: 
   
    
Schema: postgres (default)
Login: 
    
     
Password: 
     
      
Port: 
      

      
     
    
   

Click "Test" button to check your connection then save. Now click at the Airflow icon to return to home page. You should see task name "create_postgres_tables". Try to run by clicking start button select "Trigger DAG".

You might also like...
In this project, ETL pipeline is build on data warehouse hosted on AWS Redshift.

ETL Pipeline for AWS Project Description In this project, ETL pipeline is build on data warehouse hosted on AWS Redshift. The data is loaded from S3 t

Demonstrate a Dataflow pipeline that saves data from an API into BigQuery table

Overview dataflow-mvp provides a basic example pipeline that pulls data from an API and writes it to a BigQuery table using GCP's Dataflow (i.e., Apac

X-news - Pipeline data use scrapy, kafka, spark streaming, spark ML and elasticsearch, Kibana

X-news - Pipeline data use scrapy, kafka, spark streaming, spark ML and elasticsearch, Kibana

An ETL Pipeline of a large data set from a fictitious music streaming service named Sparkify.

An ETL Pipeline of a large data set from a fictitious music streaming service named Sparkify. The ETL process flows from AWS's S3 into staging tables in AWS Redshift.

Mortgage-loan-prediction - Show how to perform advanced Analytics and Machine Learning in Python using a full complement of PyData utilities

Mortgage-loan-prediction - Show how to perform advanced Analytics and Machine Learning in Python using a full complement of PyData utilities. This is aimed at those looking to get into the field of Data Science or those who are already in the field and looking to solve a real-world project with python.

Flenser is a simple, minimal, automated exploratory data analysis tool.

Flenser Have you ever been handed a dataset you've never seen before? Flenser is a simple, minimal, automated exploratory data analysis tool. It runs

Lale is a Python library for semi-automated data science.
Lale is a Python library for semi-automated data science.

Lale is a Python library for semi-automated data science. Lale makes it easy to automatically select algorithms and tune hyperparameters of pipelines that are compatible with scikit-learn, in a type-safe fashion.

Data Competition: automated systems that can detect whether people are not wearing masks or are wearing masks incorrectly
Data Competition: automated systems that can detect whether people are not wearing masks or are wearing masks incorrectly

Table of contents Introduction Dataset Model & Metrics How to Run Quickstart Install Training Evaluation Detection DATA COMPETITION The COVID-19 pande

Pipeline and Dataset helpers for complex algorithm evaluation.

tpcp - Tiny Pipelines for Complex Problems A generic way to build object-oriented datasets and algorithm pipelines and tools to evaluate them pip inst

Releases(airflow-postgres-dag)
Ejercicios Panda usando Pandas

Readme Below we add configuration details to locally test your application To co

1 Jan 22, 2022
A data analysis using python and pandas to showcase trends in school performance.

A data analysis using python and pandas to showcase trends in school performance. A data analysis to showcase trends in school performance using Panda

Jimmy Faccioli 0 Sep 07, 2021
2019 Data Science Bowl

Kaggle-2019-Data-Science-Bowl-Solution - Here i present my solution to kaggle 2019 data science bowl and how i improved it to win a silver medal in that competition.

Deepak Nandwani 1 Jan 01, 2022
Bearsql allows you to query pandas dataframe with sql syntax.

Bearsql adds sql syntax on pandas dataframe. It uses duckdb to speedup the pandas processing and as the sql engine

14 Jun 22, 2022
A variant of LinUCB bandit algorithm with local differential privacy guarantee

Contents LDP LinUCB Description Model Architecture Dataset Environment Requirements Script Description Script and Sample Code Script Parameters Launch

Weiran Huang 4 Oct 25, 2022
talkbox is a scikit for signal/speech processing, to extend scipy capabilities in that domain.

talkbox is a scikit for signal/speech processing, to extend scipy capabilities in that domain.

David Cournapeau 76 Nov 30, 2022
This is a repo documenting the best practices in PySpark.

Spark-Syntax This is a public repo documenting all of the "best practices" of writing PySpark code from what I have learnt from working with PySpark f

Eric Xiao 447 Dec 25, 2022
PyStan, a Python interface to Stan, a platform for statistical modeling. Documentation: https://pystan.readthedocs.io

PyStan PyStan is a Python interface to Stan, a package for Bayesian inference. Stan® is a state-of-the-art platform for statistical modeling and high-

Stan 229 Dec 29, 2022
Geospatial data-science analysis on reasons behind delay in Grab ride-share services

Grab x Pulis Detailed analysis done to investigate possible reasons for delay in Grab services for NUS Data Analytics Competition 2022, to be found in

Keng Hwee 6 Jun 07, 2022
Working Time Statistics of working hours and working conditions by industry and company

Working Time Statistics of working hours and working conditions by industry and company

Feng Ruohang 88 Nov 04, 2022
Import, connect and transform data into Excel

xlwings_query Import, connect and transform data into Excel. Description The concept is to apply data transformations to a main query object. When the

George Karakostas 1 Jan 19, 2022
Data-sets from the survey and analysis

bachelor-thesis "Umfragewerte.xlsx" contains the orginal survey results. "umfrage_alle.csv" contains the survey results but one participant is cancele

1 Jan 26, 2022
PySpark Structured Streaming ROS Kafka ApacheSpark Cassandra

PySpark-Structured-Streaming-ROS-Kafka-ApacheSpark-Cassandra The purpose of this project is to demonstrate a structured streaming pipeline with Apache

Zekeriyya Demirci 5 Nov 13, 2022
Top 50 best selling books on amazon

It's a dashboard that shows the detailed information about each book in the top 50 best selling books on amazon over the last ten years

Nahla Tarek 1 Nov 18, 2021
Two phase pipeline + StreamlitTwo phase pipeline + Streamlit

Two phase pipeline + Streamlit This is an example project that demonstrates how to create a pipeline that consists of two phases of execution. In betw

Rick Lamers 1 Nov 17, 2021
Visions provides an extensible suite of tools to support common data analysis operations

Visions And these visions of data types, they kept us up past the dawn. Visions provides an extensible suite of tools to support common data analysis

168 Dec 28, 2022
Python implementation of Principal Component Analysis

Principal Component Analysis Principal Component Analysis (PCA) is a dimension-reduction algorithm. The idea is to use the singular value decompositio

Ignacio Darago 1 Nov 06, 2021
Unsub is a collection analysis tool that assists libraries in analyzing their journal subscriptions.

About Unsub is a collection analysis tool that assists libraries in analyzing their journal subscriptions. The tool provides rich data and a summary g

9 Nov 16, 2022
Validation and inference over LinkML instance data using souffle

Translates LinkML schemas into Datalog programs and executes them using Souffle, enabling advanced validation and inference over instance data

Linked data Modeling Language 7 Aug 07, 2022
Flenser is a simple, minimal, automated exploratory data analysis tool.

Flenser Have you ever been handed a dataset you've never seen before? Flenser is a simple, minimal, automated exploratory data analysis tool. It runs

John McCambridge 79 Sep 20, 2022