A flexible ML framework built to simplify medical image reconstruction and analysis experimentation.

Overview

meddlr

Getting Started

Meddlr is a config-driven ML framework built to simplify medical image reconstruction and analysis problems.

Installation

To avoid cuda-related issues, downloading torch, torchvision, and cupy (optional) must be done prior to downloading other requirements.

# Create and activate the environment.
conda create -n meddlr_env python=3.7
conda activate meddlr_env

# Install cuda-dependant libraries. Change cuda version as needed.
# Below we show examples for cuda-10.1
conda install pytorch torchvision cudatoolkit=10.1 -c pytorch
pip install cupy-cuda101

# Install as package in virtual environment (recommended):
git clone https://github.com/ad12/meddlr.git
cd dl-ss-recon && python -m pip install -e '.[dev]'

# For all contributors, install development packages.
make dev

Contributing

See CONTRIBUTING.md for more information.

Acknowledgements

Meddlr's design for rapid experimentation and benchmarking is inspired by detectron2.

About

If you use Meddlr for your work, please consider citing the following work:

@article{desai2021noise2recon,
  title={Noise2Recon: A Semi-Supervised Framework for Joint MRI Reconstruction and Denoising},
  author={Desai, Arjun D and Ozturkler, Batu M and Sandino, Christopher M and Vasanawala, Shreyas and Hargreaves, Brian A and Re, Christopher M and Pauly, John M and Chaudhari, Akshay S},
  journal={arXiv preprint arXiv:2110.00075},
  year={2021}
}
Owner
Arjun Desai
Arjun Desai
[CVPR 2022 Oral] Rethinking Minimal Sufficient Representation in Contrastive Learning

Rethinking Minimal Sufficient Representation in Contrastive Learning PyTorch implementation of Rethinking Minimal Sufficient Representation in Contras

36 Nov 23, 2022
Prompt-BERT: Prompt makes BERT Better at Sentence Embeddings

Prompt-BERT: Prompt makes BERT Better at Sentence Embeddings Results on STS Tasks Model STS12 STS13 STS14 STS15 STS16 STSb SICK-R Avg. unsup-prompt-be

196 Jan 08, 2023
Neural Geometric Level of Detail: Real-time Rendering with Implicit 3D Shapes (CVPR 2021 Oral)

Neural Geometric Level of Detail: Real-time Rendering with Implicit 3D Surfaces Official code release for NGLOD. For technical details, please refer t

659 Dec 27, 2022
A code implementation of AC-GC: Activation Compression with Guaranteed Convergence, in NeurIPS 2021.

Code For AC-GC: Lossy Activation Compression with Guaranteed Convergence This code is intended to be used as a supplemental material for submission to

Dave Evans 2 Nov 01, 2022
DRLib:A concise deep reinforcement learning library, integrating HER and PER for almost off policy RL algos.

DRLib:A concise deep reinforcement learning library, integrating HER and PER for almost off policy RL algos A concise deep reinforcement learning libr

329 Jan 03, 2023
Api for getting bin info and getting encrypted card details for adyen.

Bin Info And Adyen Cse Enc Python api for getting bin info and getting encrypted

Roldex Stark 8 Dec 30, 2022
2021:"Bridging Global Context Interactions for High-Fidelity Image Completion"

TFill arXiv | Project This repository implements the training, testing and editing tools for "Bridging Global Context Interactions for High-Fidelity I

Chuanxia Zheng 111 Jan 08, 2023
My implementation of Fully Convolutional Neural Networks in Keras

Keras-FCN This repository contains my implementation of Fully Convolutional Networks in Keras (Tensorflow backend). Currently, semantic segmentation c

The Duy Nguyen 15 Jan 13, 2020
School of Artificial Intelligence at the Nanjing University (NJU)School of Artificial Intelligence at the Nanjing University (NJU)

F-Principle This is an exercise problem of the digital signal processing (DSP) course at School of Artificial Intelligence at the Nanjing University (

Thyrix 5 Nov 23, 2022
TransMorph: Transformer for Medical Image Registration

TransMorph: Transformer for Medical Image Registration keywords: Vision Transformer, Swin Transformer, convolutional neural networks, image registrati

Junyu Chen 180 Jan 07, 2023
A flag generation AI created using DeepAIs API

Vex AI or Vexiology AI is an Artifical Intelligence created to generate custom made flag design texts. It uses DeepAIs API. Please be aware that you must include your own DeepAI API key. See instruct

Bernie 10 Apr 06, 2022
Self-supervised learning optimally robust representations for domain generalization.

OptDom: Learning Optimal Representations for Domain Generalization This repository contains the official implementation for Optimal Representations fo

Yangjun Ruan 18 Aug 25, 2022
The code release of paper Low-Light Image Enhancement with Normalizing Flow

[AAAI 2022] Low-Light Image Enhancement with Normalizing Flow Paper | Project Page Low-Light Image Enhancement with Normalizing Flow Yufei Wang, Renji

Yufei Wang 176 Jan 06, 2023
Code for the paper Open Sesame: Getting Inside BERT's Linguistic Knowledge.

Open Sesame This repository contains the code for the paper Open Sesame: Getting Inside BERT's Linguistic Knowledge. Credits We built the project on t

9 Jul 24, 2022
Self-Supervised Methods for Noise-Removal

SSMNR | Self-Supervised Methods for Noise Removal Image denoising is the task of removing noise from an image, which can be formulated as the task of

1 Jan 16, 2022
PyTorch version of the paper 'Enhanced Deep Residual Networks for Single Image Super-Resolution' (CVPRW 2017)

About PyTorch 1.2.0 Now the master branch supports PyTorch 1.2.0 by default. Due to the serious version problem (especially torch.utils.data.dataloade

Sanghyun Son 2.1k Dec 27, 2022
a morph transfer UGATIT for image translation.

Morph-UGATIT a morph transfer UGATIT for image translation. Introduction 中文技术文档 This is Pytorch implementation of UGATIT, paper "U-GAT-IT: Unsupervise

55 Nov 14, 2022
Implementation of "Bidirectional Projection Network for Cross Dimension Scene Understanding" CVPR 2021 (Oral)

Bidirectional Projection Network for Cross Dimension Scene Understanding CVPR 2021 (Oral) [ Project Webpage ] [ arXiv ] [ Video ] Existing segmentatio

Hu Wenbo 135 Dec 26, 2022
This repository contains a PyTorch implementation of "AD-NeRF: Audio Driven Neural Radiance Fields for Talking Head Synthesis".

AD-NeRF: Audio Driven Neural Radiance Fields for Talking Head Synthesis | Project Page | Paper | PyTorch implementation for the paper "AD-NeRF: Audio

551 Dec 29, 2022
PyTorch implementation of our method for adversarial attacks and defenses in hyperspectral image classification.

Self-Attention Context Network for Hyperspectral Image Classification PyTorch implementation of our method for adversarial attacks and defenses in hyp

22 Dec 02, 2022