A library for uncertainty quantification based on PyTorch

Overview

Torchuq [logo here]

TorchUQ is an extensive library for uncertainty quantification (UQ) based on pytorch. TorchUQ currently supports 10 representations for uncertainty, and around 50 different methods for uncertainty evaluation and visualization, calibration and conformal prediction.

Why TorchUQ

TorchUQ is a one-stop solution for uncertainty quantification (UQ).

Accurate uncertainty quantification (UQ) is extremely important in high-stakes applications such as autonomous driving, healthcare, and public policy --- prediction models in such applications should know what they do not know. UQ also finds numerous applications in active learning, statistical inference, or in natural science and engineering applications that are rife with sources of uncertainty.

For practitioners

Torchuq aims to provide an easy to use arsenal of uncertainty quantification methods. Torchuq is designed for the following benefits:

Plug and Play: Simple unified interface to access a large arsenal of UQ methods.

Built on PyTorch: Native GPU & auto-diff support, seamless integration with deep learning pipelines.

Documentation: Detailed tutorial to walk through popular UQ algorithms. Extensive documentation.

Extensive and Extensible: Supports calibration, conformal, multi-calibration and forecast evaluation. Easy to add new methods.

For researchers

Torchuq aims to provide a easy to use platform for conducting and distributing research on uncertainty quantification. Torchuq is designed for the following benefits:

Baseline implementation: TorchUQ provides high quality implementation of many popular baseline methods to standardize comparison.

Benchmark datasets: a large set of datasets used in recent UQ papers with a one-line interface to retrieve these datasets.

Distribute your research: you are welcome to distribute your algorithm via the TorchUQ interface. For details see [link].

Installation

First download the torchuq from pypi. To run the code, you can install the dependencies with the follwoing command

pip3 install requirements

pypi package link to come

Quickstart

import torchuq
from torchuq.evaluate import distribution 
from torchuq.transform.conformal import ConformalCalibrator 
from torchuq.dataset import create_example_regression  

In this very simple example, we create a synthetic prediction (which is a set of Gaussian distributions) and recalibrate them with conformal calibration.

predictions, labels = create_example_regression()

The example predictions are intentially incorrect (i.e. the label is not drawn from the predictions). We will recalibrate the distribution with a powerful recalibration algorithm called conformal calibration. It takes as input the predictions and the labels, and learns a recalibration map that can be applied to new data (here for illustration purposes we apply it to the original data).

calibrator = ConformalCalibrator(input_type='distribution', interpolation='linear')
calibrator.train(predictions, labels)
adjusted_predictions = calibrator(predictions)

We can plot these distribution predictions as a sequence of density functions, and the labels as the cross-shaped markers. As shown by the plot, the original predictions have systematically incorrect variance and mean, which is fixed by the recalibration algorithm.

distribution.plot_density_sequence(predictions, labels, smooth_bw=10)
distribution.plot_density_sequence(adjusted_predictions, labels, smooth_bw=10)

plot_original plot_calibrate

What's Next?

A good way to start is to read about the basic design philosophy and usage of the package, then go through these tutorials. All the tutorials are interactive jupyter notebooks. You can either download them to run locally or view them here.

Owner
TorchUQ
TorchUQ
Code for "Typilus: Neural Type Hints" PLDI 2020

Typilus A deep learning algorithm for predicting types in Python. Please find a preprint here. This repository contains its implementation (src/) and

47 Nov 08, 2022
Custom TensorFlow2 implementations of forward and backward computation of soft-DTW algorithm in batch mode.

Batch Soft-DTW(Dynamic Time Warping) in TensorFlow2 including forward and backward computation Custom TensorFlow2 implementations of forward and backw

19 Aug 30, 2022
Pairwise Learning for Neural Link Prediction for OGB (PLNLP-OGB)

Pairwise Learning for Neural Link Prediction for OGB (PLNLP-OGB) This repository provides evaluation codes of PLNLP for OGB link property prediction t

Zhitao WANG 31 Oct 10, 2022
Implement the Pareto Optimizer and pcgrad to make a self-adaptive loss for multi-task

multi-task_losses_optimizer Implement the Pareto Optimizer and pcgrad to make a self-adaptive loss for multi-task 已经实验过了,不会有cuda out of memory情况 ##Par

14 Dec 25, 2022
Python implementation of "Elliptic Fourier Features of a Closed Contour"

PyEFD An Python/NumPy implementation of a method for approximating a contour with a Fourier series, as described in [1]. Installation pip install pyef

Henrik Blidh 71 Dec 09, 2022
[ACM MM 2021] Yes, "Attention is All You Need", for Exemplar based Colorization

Transformer for Image Colorization This is an implemention for Yes, "Attention Is All You Need", for Exemplar based Colorization, and the current soft

Wang Yin 30 Dec 07, 2022
Face detection using deep learning.

Face Detection Docker Solution Using Faster R-CNN Dockerface is a deep learning face detector. It deploys a trained Faster R-CNN network on Caffe thro

Nataniel Ruiz 181 Dec 19, 2022
A Dying Light 2 (DL2) PAKFile Utility for Modders and Mod Makers.

Dying Light 2 PAKFile Utility A Dying Light 2 (DL2) PAKFile Utility for Modders and Mod Makers. This tool aims to make PAKFile (.pak files) modding a

RHQ Online 12 Aug 26, 2022
Algorithms for outlier, adversarial and drift detection

Alibi Detect is an open source Python library focused on outlier, adversarial and drift detection. The package aims to cover both online and offline d

Seldon 1.6k Dec 31, 2022
TorchCV: A PyTorch-Based Framework for Deep Learning in Computer Vision

TorchCV: A PyTorch-Based Framework for Deep Learning in Computer Vision @misc{you2019torchcv, author = {Ansheng You and Xiangtai Li and Zhen Zhu a

Donny You 2.2k Jan 06, 2023
Official repository of the paper "GPR1200: A Benchmark for General-PurposeContent-Based Image Retrieval"

GPR1200 Dataset GPR1200: A Benchmark for General-Purpose Content-Based Image Retrieval (ArXiv) Konstantin Schall, Kai Uwe Barthel, Nico Hezel, Klaus J

Visual Computing Group 16 Nov 21, 2022
An extremely simple, intuitive, hardware-friendly, and well-performing network structure for LiDAR semantic segmentation on 2D range image. IROS21

FIDNet_SemanticKITTI Motivation Implementing complicated network modules with only one or two points improvement on hardware is tedious. So here we pr

YimingZhao 54 Dec 12, 2022
CLDF dataset derived from Robbeets et al.'s "Triangulation Supports Agricultural Spread" from 2021

CLDF dataset derived from Robbeets et al.'s "Triangulation Supports Agricultural Spread" from 2021 How to cite If you use these data please cite the o

Digital Linguistics 2 Dec 20, 2021
Simple ONNX operation generator. Simple Operation Generator for ONNX.

sog4onnx Simple ONNX operation generator. Simple Operation Generator for ONNX. https://github.com/PINTO0309/simple-onnx-processing-tools Key concept V

Katsuya Hyodo 6 May 15, 2022
A Python wrapper for Google Tesseract

Python Tesseract Python-tesseract is an optical character recognition (OCR) tool for python. That is, it will recognize and "read" the text embedded i

Matthias A Lee 4.6k Jan 05, 2023
Decoding the Protein-ligand Interactions Using Parallel Graph Neural Networks

Decoding the Protein-ligand Interactions Using Parallel Graph Neural Networks Requirements python 0.10+ rdkit 2020.03.3.0 biopython 1.78 openbabel 2.4

Neeraj Kumar 3 Nov 23, 2022
NALSM: Neuron-Astrocyte Liquid State Machine

NALSM: Neuron-Astrocyte Liquid State Machine This package is a Tensorflow implementation of the Neuron-Astrocyte Liquid State Machine (NALSM) that int

Computational Brain Lab 4 Nov 28, 2022
git《Learning Pairwise Inter-Plane Relations for Piecewise Planar Reconstruction》(ECCV 2020) GitHub:

Learning Pairwise Inter-Plane Relations for Piecewise Planar Reconstruction Code for the ECCV 2020 paper by Yiming Qian and Yasutaka Furukawa Getting

37 Dec 04, 2022
Code for the paper "Multi-task problems are not multi-objective"

Multi-Task problems are not multi-objective This is the code for the paper "Multi-Task problems are not multi-objective" in which we show that the com

Michael Ruchte 5 Aug 19, 2022