deep-table implements various state-of-the-art deep learning and self-supervised learning algorithms for tabular data using PyTorch.

Overview

deep-table

deep-table implements various state-of-the-art deep learning and self-supervised learning algorithms for tabular data using PyTorch.

Design

Architecture

As shown below, each pretraining/fine-tuning model is decomposed into two modules: Encoder and Head.

Encoder

Encoder has Embedding and Backbone.

  • Embedding makes continuous/categorical features tokenized or simply normalized.
  • Backbone processes the tokenized features.

Pretraining/Fine-tuning Head

Pretraining/Fine-tuning Head uses Encoder module for training.

Implemented Methods

Available Modules

Encoder - Embedding

  • FeatureEmbedding
  • TabTransformerEmbedding

Encoder - Backbone

  • MLPBackbone
  • FTTransformerBackbone
  • SAINTBackbone

Model - Head

  • MLPHeadModel

Model - Pretraining

  • DenoisingPretrainModel
  • SAINTPretrainModel
  • TabTransformerPretrainModel
  • VIMEPretrainModel

How To Use

Step 0. Install

python setup.py install

# Installation with pip
pip install -e .

Step 1. Define config.json

You have to define three configs at least.

  1. encoder
  2. model
  3. trainer

Minimum configurations are as follows:

from omegaconf import OmegaConf

encoder_config = OmegaConf.create({
    "embedding": {
        "name": "FeatureEmbedding",
    },
    "backbone": {
        "name": "FTTransformerBackbone",
    }
})

model_config = OmegaConf.create({
    "name": "MLPHeadModel"
})

trainer_config = OmegaConf.create({
    "max_epochs": 1,
})

Other parameters can be changed also by config.json if you want.

Step 2. Define Datamodule

from deep_table.data.data_module import TabularDatamodule


datamodule = TabularDatamodule(
    train=train_df,
    validation=val_df,
    test=test_df,
    task="binary",
    dim_out=1,
    categorical_cols=["education", "occupation", ...],
    continuous_cols=["age", "hours-per-week", ...],
    target=["income"],
    num_categories=110,
)

Step 3. Run Training

>> {'accuracy': array([0.8553...]), 'AUC': array([0.9111...]), 'F1 score': array([0.9077...]), 'cross_entropy': array([0.3093...])} ">
from deep_table.estimators.base import Estimator
from deep_table.utils import get_scores


estimator = Estimator(
    encoder_config,      # Encoder architecture
    model_config,        # model settings (learning rate, scheduler...)
    trainer_config,      # training settings (epoch, gpu...)
)

estimator.fit(datamodule)
predict = estimator.predict(datamodule.dataloader(split="test"))
get_scores(predict, target, task="binary")
>>> {'accuracy': array([0.8553...]),
     'AUC': array([0.9111...]),
     'F1 score': array([0.9077...]),
     'cross_entropy': array([0.3093...])}

If you want to train a model with pretraining, write as follows:

from deep_table.estimators.base import Estimator
from deep_table.utils import get_scores


pretrain_model_config = OmegaConf.create({
    "name": "SAINTPretrainModel"
})

pretrain_model = Estimator(encoder_config, pretrain_model_config, trainer_config)
pretrain_model.fit(datamodule)

estimator = Estimator(encoder_config, model_config, trainer_config)
estimator.fit(datamodule, from_pretrained=pretrain_model)

See notebooks/train_adult.ipynb for more details.

Custom Datasets

You can use your own datasets.

  1. Prepare datasets and create DataFrame
  2. Preprocess DataFrame
  3. Create your own datamodules using TabularDatamodule

Example code is shown below.

import pandas as pd

import os,sys; sys.path.append(os.path.abspath(".."))
from deep_table.data.data_module import TabularDatamodule
from deep_table.preprocess import CategoryPreprocessor


# 0. Prepare datasets and create DataFrame
iris = pd.read_csv('https://raw.githubusercontent.com/mwaskom/seaborn-data/master/iris.csv')

# 1. Preprocessing pd.DataFrame
category_preprocesser = CategoryPreprocessor(categorical_columns=["species"], use_unk=False)
iris = category_preprocesser.fit_transform(iris)

# 2. TabularDatamodule
datamodule = TabularDatamodule(
    train=iris.iloc[:20],
    val=iris.iloc[20:40],
    test=iris.iloc[40:],
    task="multiclass",
    dim_out=3,
    categorical_columns=[],
    continuous_columns=["sepal_length", "sepal_width", "petal_length", "petal_width"],
    target=["species"],
    num_categories=0,
)

See notebooks/custom_dataset.ipynb for the full training example.

Custom Models

You can also use your Embedding/Backbone/Model. Set arguments as shown below.

estimator = Estimator(
    encoder_config, model_config, trainer_config,
    custom_embedding=YourEmbedding, custom_backbone=YourBackbone, custom_model=YourModel
)

If custom models are set, the attributes name in corresponding configs will be overwritten.

See notebooks/custom_model.ipynb for more details.

CoINN: Correlated-informed neural networks: a new machine learning framework to predict pressure drop in micro-channels

CoINN: Correlated-informed neural networks: a new machine learning framework to predict pressure drop in micro-channels Accurate pressure drop estimat

Alejandro Montanez 0 Jan 21, 2022
TorchMultimodal is a PyTorch library for training state-of-the-art multimodal multi-task models at scale.

TorchMultimodal (Alpha Release) Introduction TorchMultimodal is a PyTorch library for training state-of-the-art multimodal multi-task models at scale.

Meta Research 663 Jan 06, 2023
Safe Policy Optimization with Local Features

Safe Policy Optimization with Local Feature (SPO-LF) This is the source-code for implementing the algorithms in the paper "Safe Policy Optimization wi

Akifumi Wachi 6 Jun 05, 2022
Compute execution plan: A DAG representation of work that you want to get done. Individual nodes of the DAG could be simple python or shell tasks or complex deeply nested parallel branches or embedded DAGs themselves.

Hello from magnus Magnus provides four capabilities for data teams: Compute execution plan: A DAG representation of work that you want to get done. In

12 Feb 08, 2022
ML-PersonalWork - Big assignment PersonalWork in Machine Learning, 2021 autumn BUAA.

ML-PersonalWork - Big assignment PersonalWork in Machine Learning, 2021 autumn BUAA.

Snapdragon Lee 2 Dec 16, 2022
Deep generative models of 3D grids for structure-based drug discovery

What is liGAN? liGAN is a research codebase for training and evaluating deep generative models for de novo drug design based on 3D atomic density grid

Matt Ragoza 152 Jan 03, 2023
The code of Zero-shot learning for low-light image enhancement based on dual iteration

Zero-shot-dual-iter-LLE The code of Zero-shot learning for low-light image enhancement based on dual iteration. You can get the real night image tests

1 Mar 18, 2022
Implementation of Restricted Boltzmann Machine (RBM) and its variants in Tensorflow

xRBM Library Implementation of Restricted Boltzmann Machine (RBM) and its variants in Tensorflow Installation Using pip: pip install xrbm Examples Tut

Omid Alemi 55 Dec 29, 2022
Clustergram - Visualization and diagnostics for cluster analysis in Python

Clustergram Visualization and diagnostics for cluster analysis Clustergram is a diagram proposed by Matthias Schonlau in his paper The clustergram: A

Martin Fleischmann 96 Dec 26, 2022
Repositorio oficial del curso IIC2233 Programación Avanzada 🚀✨

IIC2233 - Programación Avanzada Evaluación Las evaluaciones serán efectuadas por medio de actividades prácticas en clases y tareas. Se calculará la no

IIC2233 @ UC 47 Sep 06, 2022
Open source implementation of AceNAS: Learning to Rank Ace Neural Architectures with Weak Supervision of Weight Sharing

AceNAS This repo is the experiment code of AceNAS, and is not considered as an official release. We are working on integrating AceNAS as a built-in st

Yuge Zhang 6 Sep 07, 2022
Repository for self-supervised landmark discovery

self-supervised-landmarks Repository for self-supervised landmark discovery Requirements pytorch pynrrd (for 3d images) Usage The use of this models i

Riddhish Bhalodia 2 Apr 18, 2022
Object DGCNN and DETR3D, Our implementations are built on top of MMdetection3D.

This repo contains the implementations of Object DGCNN (https://arxiv.org/abs/2110.06923) and DETR3D (https://arxiv.org/abs/2110.06922). Our implementations are built on top of MMdetection3D.

Wang, Yue 539 Jan 07, 2023
Implementation of Nyström Self-attention, from the paper Nyströmformer

Nyström Attention Implementation of Nyström Self-attention, from the paper Nyströmformer. Yannic Kilcher video Install $ pip install nystrom-attention

Phil Wang 95 Jan 02, 2023
A unified framework for machine learning with time series

Welcome to sktime A unified framework for machine learning with time series We provide specialized time series algorithms and scikit-learn compatible

The Alan Turing Institute 6k Jan 08, 2023
A hybrid framework (neural mass model + ML) for SC-to-FC prediction

The current workflow simulates brain functional connectivity (FC) from structural connectivity (SC) with a neural mass model. Gradient descent is applied to optimize the parameters in the neural mass

Yilin Liu 1 Jan 26, 2022
Revisiting Video Saliency: A Large-scale Benchmark and a New Model (CVPR18, PAMI19)

DHF1K =========================================================================== Wenguan Wang, J. Shen, M.-M Cheng and A. Borji, Revisiting Video Sal

Wenguan Wang 126 Dec 03, 2022
Official Implementation and Dataset of "PPR10K: A Large-Scale Portrait Photo Retouching Dataset with Human-Region Mask and Group-Level Consistency", CVPR 2021

Portrait Photo Retouching with PPR10K Paper | Supplementary Material PPR10K: A Large-Scale Portrait Photo Retouching Dataset with Human-Region Mask an

184 Dec 11, 2022
Tool cek opsi checkpoint facebook!

tool apa ini? cek_opsi_facebook adalah sebuah tool yang mengecek opsi checkpoint akun facebook yang terkena checkpoint! tujuan dibuatnya tool ini? too

Muhammad Latif Harkat 2 Jul 17, 2022
Here I will explain the flow to deploy your custom deep learning models on Ultra96V2.

Xilinx_Vitis_AI This repo will help you to Deploy your Deep Learning Model on Ultra96v2 Board. Prerequisites Vitis Core Development Kit 2019.2 This co

Amin Mamandipoor 1 Feb 08, 2022