Some useful extensions for Matplotlib.

Overview

mplx

Some useful extensions for Matplotlib.

PyPi Version PyPI pyversions GitHub stars Downloads

gh-actions codecov LGTM Code style: black

Contour plots for functions with discontinuities

plt.contour mplx.contour(max_jump=1.0)

Matplotlib has problems with contour plots of functions that have discontinuities. The software has no way to tell discontinuities and very sharp, but continuous cliffs apart, and contour lines will be drawn along the discontinuity.

mplx improves upon this by adding the parameter max_jump. If the difference between two function values in the grid is larger than max_jump, a discontinuity is assumed and no line is drawn. Similarly, min_jump can be used to highlight the discontinuity.

As an example, take the function imag(log(Z)) for complex values Z. Matplotlib's contour lines along the negative real axis are wrong.

import matplotlib.pyplot as plt
import numpy as np

import mplx

x = np.linspace(-2.0, 2.0, 100)
y = np.linspace(-2.0, 2.0, 100)

X, Y = np.meshgrid(x, y)
Z = X + 1j * Y

vals = np.imag(np.log(Z))

# plt.contour(X, Y, vals, levels=[-2.0, -1.0, 0.0, 1.0, 2.0])  # draws wrong lines
mplx.contour(X, Y, vals, levels=[-2.0, -1.0, 0.0, 1.0, 2.0], max_jump=1.0)
mplx.contour(X, Y, vals, levels=[0.0], min_jump=1.0, linestyles=":")

plt.gca().set_aspect("equal")
plt.show()

Relevant discussions:

License

This software is published under the MIT license.

Comments
  • Remove some typing hint to support older numpy ?

    Remove some typing hint to support older numpy ?

    Hello, I got an error ModuleNotFoundError: No module named 'numpy.typing' due to the typing hint from numpy.typing import ArrayLike.

    Would you mind remove this hint to support older numpy version like 1.19.* ? It seems no performance issue after remove it.

    opened by ProV1denCEX 5
  • Support for horizontal barchart

    Support for horizontal barchart

    This PR solves #30 by adding an alignment argument to show_bar_values defaulting to "vertical".

    I couldn't think of a robust way of determining the alignment automatically. Checking if the width of the bar is greater or lower than its height seemed a bit dodgy in some cases... I don't know. What do you think @nschloe ?

    Usage (adapted from README demo):

    import matplotlib.pyplot as plt
    import matplotx
    
    labels = ["Australia", "Brazil", "China", "Germany", "Mexico", "United\nStates"]
    vals = [21.65, 24.5, 6.95, 8.40, 21.00, 8.55]
    ypos = range(len(vals))
    
    
    with plt.style.context(matplotx.styles.dufte_bar):
        plt.barh(ypos, vals)
        plt.yticks(ypos, labels)
        matplotx.show_bar_values("{:.2f}", alignment="horizontal")
        plt.title("average temperature [°C]")
        plt.tight_layout()
        plt.show()
    

    Produces: Figure_1

    opened by RemDelaporteMathurin 3
  • Support for horizontal barchart

    Support for horizontal barchart

    matplotx.show_bar_values works perfectly with vertical bar charts but not with horizontal bar charts.

    These are often used with long text labels.

    import matplotlib.pyplot as plt
    import matplotx
    
    labels = ["Australia", "Brazil", "China", "Germany", "Mexico", "United\nStates"]
    vals = [21.65, 24.5, 6.95, 8.40, 21.00, 8.55]
    ypos = range(len(vals))
    
    with plt.style.context(matplotx.styles.dufte_bar):
        plt.barh(ypos, vals)
        plt.yticks(ypos, labels)
        matplotx.show_bar_values("{:.2f}")
        plt.title("average temperature [°C]")
        plt.tight_layout()
        plt.show()
    
    

    Produces: image

    I can write a PR and add a show_hbar_values() function that works with horizontal bar charts and produces: image

    Or it can also be an argument of matplotx.show_bar_value defaulting to "vertical" like show_bar_value(alignement="horizontal")

    What do you think @nschloe ?

    opened by RemDelaporteMathurin 2
  • Citation

    Citation

    Great package! Thank you so much it really helps!

    I will surely use this in my next paper/talk. How can I cite this package?

    Do you plan on adding a Zenodo DOI?

    Cheers Remi

    opened by RemDelaporteMathurin 2
  • Some styles are broken

    Some styles are broken

    Using the code example in the readme:

    import matplotlib.pyplot as plt
    import matplotx
    plt.style.use(matplotx.styles.ayu)
    

    I get this error:

    File ~/.conda/envs/.../lib/python3.10/site-packages/matplotlib/style/core.py:117, in use(style)
        115 for style in styles:
        116     if not isinstance(style, (str, Path)):
    --> 117         _apply_style(style)
        118     elif style == 'default':
        119         # Deprecation warnings were already handled when creating
        120         # rcParamsDefault, no need to reemit them here.
        121         with _api.suppress_matplotlib_deprecation_warning():
    
    File ~/.conda/envs/.../lib/python3.10/site-packages/matplotlib/style/core.py:62, in _apply_style(d, warn)
         61 def _apply_style(d, warn=True):
    ---> 62     mpl.rcParams.update(_remove_blacklisted_style_params(d, warn=warn))
    
    File ~/.conda/envs/.../lib/python3.10/_collections_abc.py:994, in MutableMapping.update(self, other, **kwds)
        992 if isinstance(other, Mapping):
        993     for key in other:
    --> 994         self[key] = other[key]
        995 elif hasattr(other, "keys"):
        996     for key in other.keys():
    
    File ~/.conda/envs/.../lib/python3.10/site-packages/matplotlib/__init__.py:649, in RcParams.__setitem__(self, key, val)
        647     dict.__setitem__(self, key, cval)
        648 except KeyError as err:
    --> 649     raise KeyError(
        650         f"{key} is not a valid rc parameter (see rcParams.keys() for "
        651         f"a list of valid parameters)") from err
    
    KeyError: 'dark is not a valid rc parameter (see rcParams.keys() for a list of valid parameters)'
    

    Lib versions:

    matplotlib-base           3.5.2           py310h5701ce4_1    conda-forge
    matplotx                  0.3.7                    pypi_0    pypi
    

    This happens with aura, ayu, github, gruvbox and others.

    Some of the themes working are: challenger_deep, dracula, dufte, nord, tab10

    opened by floringogianu 1
  • Support for subplots

    Support for subplots

    Related to the issue I opened. It seems that small changes already go quite a long way towards support for subplots. This does not yet work for the style.

    For the original code, everything was correctly calculated with the axes in mind, but then it was applied to plt instead of ax, even if an ax parameter was supplied for line_labels, it was still applied to plt.

    The code changes should have no effect when there are no subplots. When there are subplots, the code now offers better support.

    import matplotlib.pyplot as plt
    import matplotx
    import numpy as np
    
    # create data
    rng = np.random.default_rng(0)
    offsets = [1.0, 1.50, 1.60]
    labels = ["no balancing", "CRV-27", "CRV-27*"]
    names = ["Plot left", "Plot right"]
    x0 = np.linspace(0.0, 3.0, 100)
    y = [offset * x0 / (x0 + 1) + 0.1 * rng.random(len(x0)) for offset in offsets]
    
    fig, axes = plt.subplots(2,1)                                           
    
    for ax, name in zip(axes, names):                                                         
        with plt.style.context(matplotx.styles.dufte):
            for yy, label in zip(y, labels):
                ax.plot(x0, yy, label=label)                                
            ax.set_xlabel("distance [m]")                                   
        matplotx.ylabel_top(name)    
        matplotx.line_labels(ax=ax)
    

    Original code

    image

    New code

    image

    opened by mitchellvanzuijlen 1
  • dufte.legend allow plt.text kwargs

    dufte.legend allow plt.text kwargs

    To draw the legend dufte uses plt.text() https://github.com/nschloe/dufte/blob/main/src/dufte/main.py#L196

    plt.text() allows for additional kwargs to customize the text https://matplotlib.org/stable/api/_as_gen/matplotlib.pyplot.text.html

    If possible, could you loop through the additional text kwargs to allow for a higher customizable legend?

    opened by exc4l 0
  • Improper ylabel_top placement

    Improper ylabel_top placement

    I've been using matplotx.ylabel_top and just noticed an issue with the label placement after setting the y tick labels explicitly. A working example is below.

    import numpy as np
    from seaborn import scatterplot
    import matplotx
    
    rng = np.random.default_rng(42)
    x = rng.random(100)
    y = -2*x + rng.normal(0, 0.5, 100)
    ax = scatterplot(
        x=x,
        y=y
    )
    ax.set_yticks([0, -1, -2])
    matplotx.ylabel_top('Example\nLabel')
    

    example

    i'm using

    numpy==1.23.4
    seaborn==0.12.1
    matplotx==0.3.10
    
    opened by markmbaum 0
  • First example images not properly clickable in readme

    First example images not properly clickable in readme

    I just came across this project, looks really neat. Especially the smooth contourf got me curious.

    I've noticed in the readme that (at least on firefox) if I click any of the three images, the link that opens (even with the "open image in new tab" context menu option) is https://github.com/nschloe/matplotx/blob/main/tests/dufte_comparison.py. In contrast, the contourf images open just fine, for instance.

    I assume the reason for this is the enclosing a tag for the first example: https://github.com/nschloe/matplotx/blob/c767b08ea91492b1db9626b8b2c8786b4bc99458/README.md?plain=1#L39

    In case this is not just a firefox thing, I would recommend trying to make the first three images clickable on their own right.

    opened by adeak 0
  • Adapt `line_labels` for `PolyCollections`

    Adapt `line_labels` for `PolyCollections`

    I'm keen on making a PR to adapt line_labels to make it work with fill_between objects (PolyCollection)

    This would be the usage and output:

    import matplotlib.pyplot as plt
    import matplotx
    import numpy as np
    
    x = np.linspace(0, 1)
    y1 = np.linspace(1, 2)
    y2 = np.linspace(2, 4)
    
    plt.fill_between(x, y1, label="label1")
    plt.fill_between(x, y1, y2, label="label1")
    
    matplotx.label_fillbetween()
    plt.show()
    

    image

    @nschloe would you be interested in this feature?

    opened by RemDelaporteMathurin 0
  • Support for subplots

    Support for subplots

    Perhaps this is already implemented and I'm just unable to find it. I think this package in general is great; very easy to use and very beautiful. Thank you for your time making it.

    I'm unable to get matplotx working properly when using subplots. Adapting the Clean line plots (dufte) example to include two subplots (side-by-side, or one-below-the-other) appears not to work.

    import matplotlib.pyplot as plt
    import matplotx
    import numpy as np
    
    # create data
    rng = np.random.default_rng(0)
    offsets = [1.0, 1.50, 1.60]
    labels = ["no balancing", "CRV-27", "CRV-27*"]
    x0 = np.linspace(0.0, 3.0, 100)
    y = [offset * x0 / (x0 + 1) + 0.1 * rng.random(len(x0)) for offset in offsets]
    
    fig, axes = plt.subplots(2,1)                                           # add subplots
    
    for ax in axes:                                                         # Let's make two identical subplots
        with plt.style.context(matplotx.styles.dufte):
            for yy, label in zip(y, labels):
                ax.plot(x0, yy, label=label)                                # changed plt. to ax.
            ax.set_xlabel("distance [m]")                                   # changed plt. to ax.
            matplotx.ylabel_top("voltage [V]")                              # move ylabel to the top, rotate
            matplotx.line_labels()                                          # line labels to the right
            #plt.show()                                                     # Including this adds the 'pretty axis' below the subplots.                             
    

    image

    opened by mitchellvanzuijlen 2
Releases(v0.3.10)
Owner
Nico Schlömer
Mathematics, numerical analysis, scientific computing, Python. Always interested in new problems.
Nico Schlömer
Because trello only have payed options to generate a RunUp chart, this solves that!

Trello Runup Chart Generator The basic concept of the project is that Corello is pay-to-use and want to use Trello To-Do/Doing/Done automation with gi

Rômulo Schiavon 1 Dec 21, 2021
GitHub Stats Visualizations : Transparent

GitHub Stats Visualizations : Transparent Generate visualizations of GitHub user and repository statistics using GitHub Actions. ⚠️ Disclaimer The pro

YuanYap 7 Apr 05, 2022
Pglive - Pglive package adds support for thread-safe live plotting to pyqtgraph

Live pyqtgraph plot Pglive package adds support for thread-safe live plotting to

Martin Domaracký 15 Dec 10, 2022
This is a sorting visualizer made with Tkinter.

Sorting-Visualizer This is a sorting visualizer made with Tkinter. Make sure you've installed tkinter in your system to use this visualizer pip instal

Vishal Choubey 7 Jul 06, 2022
Python code for solving 3D structural problems using the finite element method

3DFEM Python 3D finite element code This python code allows for solving 3D structural problems using the finite element method. New features will be a

Rémi Capillon 6 Sep 29, 2022
GitHubPoster - Make everything a GitHub svg poster

GitHubPoster Make everything a GitHub svg poster 支持 Strava 开心词场 扇贝 Nintendo Switch GPX 多邻国 Issue

yihong 1.3k Jan 02, 2023
Regress.me is an easy to use data visualization tool powered by Dash/Plotly.

Regress.me Regress.me is an easy to use data visualization tool powered by Dash/Plotly. Regress.me.-.Google.Chrome.2022-05-10.15-58-59.mp4 Get Started

Amar 14 Aug 14, 2022
This package creates clean and beautiful matplotlib plots that work on light and dark backgrounds

This package creates clean and beautiful matplotlib plots that work on light and dark backgrounds. Inspired by the work of Edward Tufte.

Nico Schlömer 205 Jan 07, 2023
A workshop on data visualization in Python with notebooks and exercises for following along.

Beyond the Basics: Data Visualization in Python The human brain excels at finding patterns in visual representations, which is why data visualizations

Stefanie Molin 162 Dec 05, 2022
Realtime Web Apps and Dashboards for Python and R

H2O Wave Realtime Web Apps and Dashboards for Python and R New! R Language API Build and control Wave dashboards using R! New! Easily integrate AI/ML

H2O.ai 3.4k Jan 06, 2023
A flexible tool for creating, organizing, and sharing visualizations of live, rich data. Supports Torch and Numpy.

Visdom A flexible tool for creating, organizing, and sharing visualizations of live, rich data. Supports Python. Overview Concepts Setup Usage API To

FOSSASIA 9.4k Jan 07, 2023
Here are my graphs for hw_02

Let's Have A Look At Some Graphs! Graph 1: State Mentions in Congressperson's Tweets on 10/01/2017 The graph below uses this data set to demonstrate h

7 Sep 02, 2022
HW 02 for CS40 - matplotlib practice

HW 02 for CS40 - matplotlib practice project instructions https://github.com/mikeizbicki/cmc-csci040/tree/2021fall/hw_02 Drake Lyric Analysis Bar Char

13 Oct 27, 2021
Interactive Dashboard for Visualizing OSM Data Change

Dashboard and intuitive data downloader for more interactive experience with interpreting osm change data.

1 Feb 20, 2022
Plot-configurations for scientific publications, purely based on matplotlib

TUEplots Plot-configurations for scientific publications, purely based on matplotlib. Usage Please have a look at the examples in the example/ directo

Nicholas Krämer 487 Jan 08, 2023
A tool for creating SVG timelines from simple JSON input.

A tool for creating SVG timelines from simple JSON input.

Jason Reisman 432 Dec 30, 2022
Histogramming for analysis powered by boost-histogram

Hist Hist is an analyst-friendly front-end for boost-histogram, designed for Python 3.7+ (3.6 users get version 2.4). See what's new. Installation You

Scikit-HEP Project 97 Dec 25, 2022
A Graph Learning library for Humans

A Graph Learning library for Humans These novel algorithms include but are not limited to: A graph construction and graph searching class can be found

Richard Tjörnhammar 1 Feb 08, 2022
Param: Make your Python code clearer and more reliable by declaring Parameters

Param Param is a library providing Parameters: Python attributes extended to have features such as type and range checking, dynamically generated valu

HoloViz 304 Jan 07, 2023
Visualization Website by using Dash and Heroku

Visualization Website by using Dash and Heroku You can visit the website https://payroll-expense-analysis.herokuapp.com/ In this project, I am interes

YF Liu 1 Jan 14, 2022