Kaggle: Cell Instance Segmentation

Related tags

Deep Learningdeep-learningkaggleimage-recognitioninstance-segmentationcell-biology
Overview

Kaggle: Cell Instance Segmentation

CI complete testing Code formatting codecov pre-commit.ci status

The goal of this challenge is to detect cells in microscope images.

Sample brain visual

with simple view on how many cels have been annotated per image:

Sample brain visual

Experimentation

install this tooling

A simple way how to use this basic functions:

! pip install https://github.com/Borda/kaggle_cell-inst-segm/archive/refs/heads/main.zip

run notebooks in Kaggle

local notebooks

  • TBD

some results

Training progress with EfficientNet3D with training for 10 epochs > over 96% validation accuracy:

Training process

Owner
Jirka Borovec
Computer Vision & Machine Learning & Bio-Medical Imaging & DeepLearn
Jirka Borovec
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