General tricks that may help you find bad, or noisy, labels in your dataset

Related tags

Miscellaneousdoubtlab
Overview

doubtlab

A lab for bad labels.

Warning still in progress.

This repository contains general tricks that may help you find bad, or noisy, labels in your dataset. The hope is that this repository makes it easier for folks to quickly check their own datasets before they invest too much time and compute on gridsearch.

Install

You can install the tool via pip.

python -m pip install doubtlab

Quickstart

Doubtlab allows you to define "reasons" for a row of data to deserve another look. These reasons can form a pipeline which can be used to retreive a sorted list of examples worth checking again.

from doubtlab import DoubtLab
from doubtlab.reasons import ProbaReason, WrongPredictionReason

# Let's say we have some model already
model.fit(X, y)

# Next we can the reasons for doubt. In this case we're saying
# that examples deserve another look if the associated proba values
# are low or if the model output doesn't match the associated label.
reasons = {
    'proba': ProbaReason(model=model),
    'wrong_pred': WrongPredictionReason(model=model)
}

# Pass these reasons to a doubtlab instance.
doubt = DoubtLab(**reasons)

# Get the predicates, or reasoning, behind the order
predicates = doubt.get_predicates(X, y)
# Get the ordered indices of examples worth checking again
indices = doubt.get_indices(X, y)
# Get the (X, y) candidates worth checking again
X_check, y_check = doubt.get_candidates(X, y)

Features

The library implemented many "reaons" for doubt.

  • ProbaReason: assign doubt when a models' confidence-values are low
  • RandomReason: assign doubt randomly, just for sure
  • LongConfidenceReason: assign doubt when a wrong class gains too much confidence
  • ShortConfidenceReason: assign doubt when the correct class gains too little confidence
  • DisagreeReason: assign doubt when two models disagree on a prediction
  • CleanLabReason: assign doubt according to cleanlab

Related Projects

  • The cleanlab project was an inspiration for this one. They have a great heuristic for bad label detection but I wanted to have a library that implements many. Be sure to check out their work on the labelerrors.com project.
  • My employer, Rasa, has always had a focus on data quality. Some of that attitude is bound to have seeped in here. Be sure to check out Rasa X if you're working on virtual assistants.
Comments
  • `QuantileDifferenceReason` and `StandardDeviationReason`

    `QuantileDifferenceReason` and `StandardDeviationReason`

    Hey! I was thinking if it would make sense to add two more reasons for regressions tasks, namely something like HighLeveragePointReason and HighStudentizedResidualReason.

    Citing Wikipedia:

    • Leverage is a measure of how far away the independent variable values of an observation are from those of the other observations. High-leverage points, if any, are outliers with respect to the independent variables (link)
    • A studentized residual is the quotient resulting from the division of a residual by an estimate of its standard deviation. [...] This is an important technique in the detection of outliers. (link)
    opened by FBruzzesi 31
  • Doubt Reason Based on Entropy

    Doubt Reason Based on Entropy

    If a machine learning model is very "confident" then the proba scores will have low entropy. The most uncertain outcome is a uniform distribution which would contain high entropy. Therefore, it could be sensible to add entropy as a reason for doubt.

    opened by koaning 10
  • Add staticmethods to reasons to prevent re-compute.

    Add staticmethods to reasons to prevent re-compute.

    I really like the current design with reasons just being function calls.

    However, when working with large datasets or in use cases where you already have the predictions of a model, I wonder if you have thought about letting users to pass either a sklearn model or the pre-computed probas (for those Reasons where it make sense). For threshold-based reasons and large datasets this could save some time and compute, allow for faster iteration, and it would open up the possibility of using other models beyond sklearn.

    I understand that the design wouldn't be as clean as it is right now, might cause miss-alignments if users don't send the correct shapes/positions, but I wonder if you have considered this (or any other way to pass pre-computed predictions).

    Just to illustrate what I mean (sorry about the dirty-pseudo code):

    class ProbaReason:
    
        def __init__(self, model=None, probas=None, max_proba=0.55):
            if not model or probas:
                 print("You should at least pass a model or probas")
            self.model = model
            self.probas = probas
            self.max_proba = max_proba
    
        def __call__(self, X, y=None):
            probas = probas if self.probas else self.model.predict_proba(X)
            result = probas.max(axis=1) <= self.max_proba
            return result.astype(np.float16)
    
    opened by dvsrepo 9
  • "Fair" Sorting

    Suppose there are 5 reasons for doubt, 4 of which overlap a lot. Then we may end up in a situation where we ignore a reason. That could be bad ... maybe it's worth exploring voting systems a bit to figure out alternative sorting methods.

    opened by koaning 7
  • Add example to docs that shows lambda X, y: y.isna()

    Add example to docs that shows lambda X, y: y.isna()

    Hey! First of all: this is a very cool project ;) I have been thinking about potential new "reasons" to doubt and I personally often look into predictions generated by a model whenever the data instance had missing values (and part of the model-pipeline imputes them)... So I wonder if it would be useful to have a FillNaNReason (or something similar) based, for example in the MissingIndicator transformer.

    opened by juanitorduz 4
  • added conda-install-option and badges to readme

    added conda-install-option and badges to readme

    This closes #14: doubtlab can now be installed with conda from conda-forge channel.

    • [x] Created conda-forge/doubtlab-feedstock to make doubtlab available on conda-forge channel.
    • [x] Added conda install option to readme.
    • [x] Added the following badges to readme.

    GitHub - License PyPI - Python Version PyPI - Package Version PyPI - Downloads Conda - Platform Conda (channel only) Docs - GitHub.io

    opened by sugatoray 4
  • Added a LICENSE

    Added a LICENSE

    Hi @koaning,

    I am assuming MIT License is okay for this repository. If you think otherwise, please feel free to make changes in the PR accordingly.

    • [x] Added an MIT License
    • [x] ~~Added a Citation file~~ Removed the citation file and updated the name of the PR. - ~~If you have an orcid, please consider adding it to the citation.cff file.~~
    opened by sugatoray 4
  • Add a conda installation option using conda-forge channel

    Add a conda installation option using conda-forge channel

    I have already started this one. Will push a PR once the conda installation option is available.

    See: Adding doubtlab from PyPI to conda-forge channel.

    @koaning As the primary maintainer of this repo, would you like to be listed as one of the maintainers of doubtlab on conda-forge channel? Please let me know, I will add your name as another maintainer of conda-forge/doubtlab-feedstock, once it is accepted.

    opened by sugatoray 3
  • Doubt about MarginConfidenceReason :-)

    Doubt about MarginConfidenceReason :-)

    Hi Vincent,

    Nice library! As mentioned a while ago on Twitter I'm doing a review to understand and compare different approaches to find label errors.

    I'm playing with the AG News dataset, which we know it contains a lot of errors from our own previous experiments with Rubrix (using the training loss and using cleanlab).

    While playing with the different reasons, I'm having difficulties to understand the reasoning behind the MarginConfidenceReason. As far as I can tell, if the model is doubting the margin between the top two predicted labels should be small, and that could point to an ambiguous example and/or a label error. If I read the code and description correctly, MarginConfidenceReason is doing the opposite, so I'd love to know the reasoning behind this to make sure I'm not missing something.

    For context, using the MarginConfidenceReason with the AG News training set yields almost the entire dataset (117788 examples for the default threshold of 0.2, and 112995 for threshold=0.5). I guess this could become useful when there's overlap with other reasons, but I want to make sure about the reasoning :-).

    opened by dvsrepo 2
  • updated docs: installation and badges

    updated docs: installation and badges

    Updated docs:

    • [x] updated installation (with conda)
    • [x] ~~added badges from readme~~

    @koaning I am not sure if you would prefer to include the badges in the docs (website). If you don't, please feel free to remove them.

    UPDATE: removed badges from the docs (docs/index.md).

    opened by sugatoray 2
  • Issue with cleanlab upgrading to v2

    Issue with cleanlab upgrading to v2

    Issue

    image

    Environment details

    image

    Temporary fix

    pip install "doubtlab==1.0.0"

    More permanent fix

    Pin doubtlab dependency to "doubtlab<2.0.0"

    More more permanent fix

    They've made some changes to their API

    Let me know if you'd like me to make a PR

    Thanks for a great package @koaning 😄

    opened by duarteocarmo 1
  • Consider a fairlearn demo.

    Consider a fairlearn demo.

    When two models disagree something interesting might be happening. But that'll only happen if you have two models that are actually different.

    What if you have one model that's better at accuracy and another one that's better at fairness.

    Maybe these labels deserve more attention too.

    opened by koaning 0
  • Assign Doubt for Dissimilarity from Labelled Set

    Assign Doubt for Dissimilarity from Labelled Set

    Suppose that y can contain NaN values if they aren't labeled. In that case, we may want to favor a subset of these NaN values. In particular: if they differ substantially from the already labeled datapoints.

    The idea here is that we may be able to sample more diverse datapoints.

    opened by koaning 10
  • Does it make sense to add an ensemble for spaCy?

    Does it make sense to add an ensemble for spaCy?

    This seems to be a like-able method of dealing with text outside the realm of scikit-learn. But I prefer to delay this feature until I really understand the use-case. For anything related to entities we cannot use sklearn, but tags/classes should work fine as-is.

    opened by koaning 1
Releases(0.2.4)
Owner
vincent d warmerdam
Solving problems involving data. Mostly NLP these days. AskMeAnything[tm].
vincent d warmerdam
Prometheus exporter for chess.com player data

chess-exporter Prometheus exporter for chess.com player data implemented via chess.com's published data API and Prometheus Python Client Example use c

Mário Uhrík 7 Feb 28, 2022
Customizable-menu-python - User customizable menu in Python

Menu personalizável pelo usuário em Python A minha ideia com esse projeto pessoa

Renan Barbosa 4 Oct 28, 2022
🍏 Make Thinc faster on macOS by calling into Apple's native Accelerate library

🍏 Make Thinc faster on macOS by calling into Apple's native Accelerate library

Explosion 81 Nov 26, 2022
Just imagine normal bancho, but you can have multiple profiles and funorange speed up maps ranked

Local osu! server Just imagine normal bancho, but you can have multiple profiles and funorange speed up maps ranked (coming soon)! Windows Setup Insta

Cover 25 Nov 15, 2022
This alerts you when the avalanche score a goal

This alerts you when the avalanche score a goal

Davis Burrill 1 Jan 15, 2022
Android Blobs Organizer

Android Blobs Organizer

Sebastiano Barezzi 96 Jan 02, 2023
- Auto join teams teams ( from calendar invite )

Auto Join Teams Meetings Requirements: Python 3.7 or higher Latest Google Chrome This script automatically logins to your account and joins the meetin

Prajin Khadka 10 Aug 20, 2022
An After Effects render queue for ShotGrid Toolkit.

AEQueue An After Effects render queue for ShotGrid Toolkit. Features Render multiple comps to locations defined by templates in your Toolkit config. C

Brand New School 5 Nov 20, 2022
This is the core of the program which takes 5k SYMBOLS and looks back N years to pull in the daily OHLC data of those symbols and saves them to disc.

This is the core of the program which takes 5k SYMBOLS and looks back N years to pull in the daily OHLC data of those symbols and saves them to disc.

Daniel Caine 1 Jan 31, 2022
Python Classes Without Boilerplate

attrs is the Python package that will bring back the joy of writing classes by relieving you from the drudgery of implementing object protocols (aka d

The attrs Cabal 4.6k Jan 02, 2023
The program calculates the BMI of people

Programmieren Einleitung: Das Programm berechnet den BMI von Menschen. Es ist sehr einfach zu handhaben, so können alle Menschen ihren BMI berechnen.

2 Dec 16, 2021
Este projeto se trata de uma análise de campanhas de marketing de uma empresa que vende acessórios para veículos.

Marketing Campaigns Este projeto se trata de uma análise de campanhas de marketing de uma empresa que vende acessórios para veículos. 1. Problema A em

Bibiana Prevedello 1 Jan 12, 2022
Block fingerprinting for the beacon chain, for client identification & client diversity metrics

blockprint This is a repository for discussion and development of tools for Ethereum block fingerprinting. The primary aim is to measure beacon chain

Sigma Prime 49 Dec 08, 2022
ticguide: quick + painless TESS observing information

ticguide: quick + painless TESS observing information Complementary to the TESS observing tool tvguide (see also WTV), which tells you if your target

Ashley Chontos 5 Nov 05, 2022
Wagtail + Lottie is a Wagtail package for playing Adobe After Effects animations exported as json with Bodymovin.

Wagtail Lottie Wagtail + Lottie is a Wagtail package for playing Adobe After Effects animations exported as json with Bodymovin. Usage Export your ani

Alexis Le Baron 7 Aug 18, 2022
Algorand Python API examples

Algorand-Py Algorand Python API examples This repo will hold example scripts to monitor activities on Algorand main net. You can: Monitor your assets

Karthik Dutt 2 Jan 23, 2022
A python program to detect rickrolls with just the youtube link.

rickroll_detector A python program to detect rickrolls with just the youtube link. Usage: clone this repo or download zip run the main.py file with py

Tricky 4 Nov 06, 2022
A silly RPG(Not MMO) made in python

Project_PyMMo A silly RPG(Not MMO) made in python, FOR WINDOWS 10 ONLY! Hello tester, to install pymmo follow the steps bellow: 1.First install python

0 Feb 08, 2022
India's own RPA Platform Python Powered

Welcome to My-AutoPylot , Made in India with ❤️ What is My-AutoPylot? PyBots is an Indian firm based in Vadodara, Gujarat. My-AutoPylot is a product d

PyBots Pvt Ltd 28 Sep 12, 2022
My solution for a MARL problem on a Grid Environment with Q-tables.

To run the project, run: conda create --name env python=3.7 pip install -r requirements.txt python run.py To-do: Add direction to the state space Take

Merve Noyan 12 Dec 25, 2021