A minimal Python package that produces slice plots through h5m DAGMC geometry files

Related tags

Data Visualizationdagmc_geometry_slice_plotter
Overview

A minimal Python package that produces slice plots through h5m DAGMC geometry files

Installation

pip install dagmc_geometry_slice_plotter

Python API Usage

These examples assume you have a h5m file called dagmc.h5m in the same folder that the Python script is being run from.

Create a plot of a slice through the geometry perpendicular to the Z axis and default settings elsewhere. This will slice through the the center of the geometry as plane_origin has not been specified.

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot = plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_normal=[0, 0, 1],
)

plot.show()

dagmc slice plot

Create a plot of a slice through the geometry perpendicular to the Z axis, offset by 200cm and with default settings elsewhere.

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot = plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_origin=[0, 0, 200],
    plane_normal=[0, 0, 1],
)

plot.show()

dagmc slice plot

Create a plot of a slice through the geometry perpendicular to the Y axis, with a rotation of 45 degrees and with default settings elsewhere. Also saves the plot with a high resolution (DPI)

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot = plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_normal=[0, 1, 0],
    rotate_plot=45,
)

plot.savefig('my_plot3.png', dpi=600)

dagmc slice plot

Saves a png image of a plot of a slice through the geometry perpendicular to the X axis and with default settings elsewhere.

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_normal = [1, 0, 0],
    rotate_plot=270,
    output_filename='my_plot4.png'
)

dagmc slice plot

Related packages

This package is used by the regular_mesh_plotter Python package to combine slice plots with regular mesh tally results and produce images like below.

paramak plot openmc regular mesh tally

paramak plot openmc regular mesh tally

Comments
  • Some funky PyQT errors?

    Some funky PyQT errors?

    Pip installed and got the following error;

    ~/.local/lib/python3.10/site-packages/IPython/external/qt_loaders.py in load_qt(api_options)
    370         return result
    371     else:
--> 372         raise ImportError("""
    373     Could not load requested Qt binding. Please ensure that
    374     PyQt4 >= 4.7, PyQt5, PySide >= 1.0.3 or PySide2 is available,

ImportError: 
    Could not load requested Qt binding. Please ensure that
    PyQt4 >= 4.7, PyQt5, PySide >= 1.0.3 or PySide2 is available,
    and only one is imported per session.

    Currently-imported Qt library:                              'pyqt5'
    PyQt4 available (requires QtCore, QtGui, QtSvg):            False
    PyQt5 available (requires QtCore, QtGui, QtSvg, QtWidgets): False
    PySide >= 1.0.3 installed:                                  False
    PySide2 installed:                                          True
    Tried to load:

    But, I do have pyqt5 & PySide2 installed

    opened by makeclean 1
  • added single function that works for file or object

    added single function that works for file or object

    Adds a function called plot_slice_of_dagmc_geometry that can accept either a dagmc file name or a trimesh object and then produce a plot.

    This provides a single entry function for users

    opened by shimwell 1
  • adopted latest py packaging approach

    adopted latest py packaging approach

    A while back I updated this package from a setup.py to use a setup.cfg and a pyproject.toml.

    It is now possible to do everything in the pyproject.toml so this PR updates the packages

    opened by shimwell 0
  • remove internal plotting methods

    remove internal plotting methods

    returning the mplt object and then using the mplt savefig() method offers more flexibility then the built in function offers.

    We can remove the internal function and reduce the code base a bit while maintaining the same functionalilty

    opened by shimwell 0
  • adding ability to make animation

    adding ability to make animation

    It would be handy if the slicer can make an animation

    Perhaps it could accept a tuple for some of these inputs of plane_origin, plane_normal, rotate_plot and then make an animation that sweeps between the inputs.

    A nice tutorial on mpl animations can be found here https://brushingupscience.com/2016/06/21/matplotlib-animations-the-easy-way/

    opened by shimwell 0
  • setuptools_scm is required in setup.cfg

    setuptools_scm is required in setup.cfg

    I might have done something incorrect with the setup.cfg / pyprogject.toml as it appears necessary to add setuptools_scm to the setup.cfg file.

    Without this package the CI fails https://github.com/fusion-energy/dagmc_geometry_slice_plotter/runs/5336107961?check_suite_focus=true

    With the package the CI passes https://github.com/fusion-energy/dagmc_geometry_slice_plotter/runs/5336124187?check_suite_focus=true

    I tested the removal of this package in this PR https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/14

    I'm just not sure why it setuptools_scm is needed as this is not the case for other packages I've translated to setup.cfg

    opened by shimwell 0
Releases(0.2.1)

  • 0.2.1(Dec 13, 2022)

    What's Changed

    • added axis labels by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/28

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.2.0...0.2.1

    Source code(tar.gz)
    Source code(zip)

  • 0.2.0(Dec 2, 2022)

    What's Changed

    • removed unused script by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/25
    • moved to src project layout by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/26
    • refactoring to allow axis aligned plots by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/27

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.3...0.2.0

    Source code(tar.gz)
    Source code(zip)

  • 0.1.3(Sep 29, 2022)

    What's Changed

    • removed packages that are installed by pyproject by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/22
    • added build back by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/23
    • added missing run cmd by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/24

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.2...0.1.3

    Source code(tar.gz)
    Source code(zip)

  • 0.1.2(Sep 29, 2022)

    What's Changed

    • adopted latest py packaging approach by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/20
    • updating package production by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/21

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.1...0.1.2

    Source code(tar.gz)
    Source code(zip)

  • 0.1.1(Mar 7, 2022)

    What's Changed

    • fixed typo in package name by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/19

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.0...0.1.1

    Source code(tar.gz)
    Source code(zip)

  • 0.1.0(Feb 25, 2022)

    What's Changed

    • updated to setup.cfg by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/13
    • Added more python versions to the testing by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/14
    • removed output filename option by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/18

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/v0.0.5...0.1.0

    Source code(tar.gz)
    Source code(zip)
Owner
Fusion Energy
A collection of software projects related to fusion energy
Fusion Energy
GitHub Repository
Eulera Dashboard is an easy and intuitive way to get a quick feel of what’s happening on the world’s market.

an easy and intuitive way to get a quick feel of what’s happening on the world’s market ! Eulera dashboard is a tool allows you to monitor historical

Salah Eddine LABIAD 4 Nov 25, 2022
Seaborn is one of the go-to tools for statistical data visualization in python. It has been actively developed since 2012 and in July 2018, the author released version 0.9. This version of Seaborn has several new plotting features, API changes and documentation updates which combine to enhance an already great library. This article will walk through a few of the highlights and show how to use the new scatter and line plot functions for quickly creating very useful visualizations of data.

12_Python_Seaborn_Module Introduction 👋 From the website, “Seaborn is a Python data visualization library based on matplotlib. It provides a high-lev

Milaan Parmar / Милан пармар / _米兰 帕尔马 192 Dec 16, 2022
Generate a 3D Skyline in STL format and a OpenSCAD file from Gitlab contributions

Your Gitlab's contributions in a 3D Skyline gitlab-skyline is a Python command to generate a skyline figure from Gitlab contributions as Github did at

Félix Gómez 70 Dec 22, 2022
YOPO is an interactive dashboard which generates various standard plots.

YOPO is an interactive dashboard which generates various standard plots.you can create various graphs and charts with a click of a button. This tool uses Dash and Flask in backend.

ADARSH C 38 Dec 20, 2022
A declarative (epi)genomics visualization library for Python

gos is a declarative (epi)genomics visualization library for Python. It is built on top of the Gosling JSON specification, providing a simplified interface for authoring interactive genomic visualiza

Gosling 107 Dec 14, 2022
A simple code for plotting figure, colorbar, and cropping with python

Python Plotting Tools This repository provides a python code to generate figures (e.g., curves and barcharts) that can be used in the paper to show th

Guanying Chen 134 Jan 02, 2023
Realtime Web Apps and Dashboards for Python and R

H2O Wave Realtime Web Apps and Dashboards for Python and R New! R Language API Build and control Wave dashboards using R! New! Easily integrate AI/ML

H2O.ai 3.4k Jan 06, 2023
eoplatform is a Python package that aims to simplify Remote Sensing Earth Observation by providing actionable information on a wide swath of RS platforms and provide a simple API for downloading and visualizing RS imagery

An Earth Observation Platform Earth Observation made easy. Report Bug | Request Feature About eoplatform is a Python package that aims to simplify Rem

Matthew Tralka 4 Aug 11, 2022
Data Visualization Guide for Presentations, Reports, and Dashboards

This is a highly practical and example-based guide on visually representing data in reports and dashboards.

Anton Zhiyanov 395 Dec 29, 2022
Create artistic visualisations with your exercise data (Python version)

strava_py Create artistic visualisations with your exercise data (Python version). This is a port of the R strava package to Python. Examples Facets A

Marcus Volz 53 Dec 28, 2022
Create 3d loss surface visualizations, with optimizer path. Issues welcome!

MLVTK A loss surface visualization tool Simple feed-forward network trained on chess data, using elu activation and Adam optimizer Simple feed-forward

7 Dec 21, 2022
A small script written in Python3 that generates a visual representation of the Mandelbrot set.

Mandelbrot Set Generator A small script written in Python3 that generates a visual representation of the Mandelbrot set. Abstract The colors in the ou

1 Dec 28, 2021
SummVis is an interactive visualization tool for text summarization.

SummVis is an interactive visualization tool for analyzing abstractive summarization model outputs and datasets.

Robustness Gym 246 Dec 08, 2022
Sparkling Pandas

SparklingPandas SparklingPandas aims to make it easy to use the distributed computing power of PySpark to scale your data analysis with Pandas. Sparkl

366 Oct 27, 2022
Getting started with Python, Dash and Plot.ly for the Data Dashboards team

data_dashboards Getting started with Python, Dash and Plot.ly for the Data Dashboards team Getting started MacOS users: # Install the pyenv version ma

Department for Levelling Up, Housing and Communities 1 Nov 08, 2021
Data Analysis: Data Visualization of Airlines

Data Analysis: Data Visualization of Airlines Anderson Cruz | London-UK | Linkedin | Nowa Capital Project: Traffic Airlines Airline Reporting Carrier

Anderson Cruz 1 Feb 10, 2022
HiPlot makes understanding high dimensional data easy

HiPlot - High dimensional Interactive Plotting HiPlot is a lightweight interactive visualization tool to help AI researchers discover correlations and

Facebook Research 2.4k Jan 04, 2023
Simple implementation of Self Organizing Maps (SOMs) with rectangular and hexagonal grid topologies

py-self-organizing-map Simple implementation of Self Organizing Maps (SOMs) with rectangular and hexagonal grid topologies. A SOM is a simple unsuperv

Jonas Grebe 1 Feb 10, 2022
Investment and risk technologies maintained by Fortitudo Technologies.

Fortitudo Technologies Open Source This package allows you to freely explore open-source implementations of some of our fundamental technologies under

Fortitudo Technologies 11 Dec 14, 2022
A collection of 100 Deep Learning images and visualizations

A collection of Deep Learning images and visualizations. The project has been developed by the AI Summer team and currently contains almost 100 images.

AI Summer 65 Sep 12, 2022