Random Walk Graph Neural Networks

Overview

Random Walk Graph Neural Networks

This repository is the official implementation of Random Walk Graph Neural Networks.

Requirements

Code is written in Python 3.6 and requires:

  • PyTorch 1.5
  • scikit-learn 0.21

Datasets

Use the following link to download datasets:

https://ls11-www.cs.tu-dortmund.de/staff/morris/graphkerneldatasets

Extract the datasets into the datasets folder.

Training and Evaluation

To train and evaluate the model in the paper, run this command:

python main.py --dataset <dataset_name> 

Example

To train and evaluate the model on MUTAG, first specify the hyperparameters in the main.py file and then run:

python main.py --dataset MUTAG --use-node-labels

Results

Our model achieves the following performance on standard graph classification datasets (note that we used the evaluation procedure and same data splits as in this paper):

Model name MUTAG D&D NCI1 PROTEINS ENZYMES
SP 80.2 (± 6.5) 78.1 (± 4.1) 72.7 (± 1.4) 75.3 (± 3.8) 38.3 (± 8.0)
GR 80.8 (± 6.4) 75.4 (± 3.4) 61.8 (± 1.7) 71.6 (± 3.1) 25.1 (± 4.4)
WL 84.6 (± 8.3) 78.1 (± 2.4) 84.8 (± 2.5) 73.8 (± 4.4) 50.3 (± 5.7)
DGCNN 84.0 (± 6.7) 76.6 (± 4.3) 76.4 (± 1.7) 72.9 (± 3.5) 38.9 (± 5.7)
DiffPool 79.8 (± 7.1) 75.0 (± 3.5) 76.9 (± 1.9) 73.7 (± 3.5) 59.5 (± 5.6)
ECC 75.4 (± 6.2) 72.6 (± 4.1) 76.2 (± 1.4) 72.3 (± 3.4) 29.5 (± 8.2)
GIN 84.7 (± 6.7) 75.3 (± 2.9) 80.0 (± 1.4) 73.3 (± 4.0) 59.6 (± 4.5)
GraphSAGE 83.6 (± 9.6) 72.9 (± 2.0) 76.0 (± 1.8) 73.0 (± 4.5) 58.2 (± 6.0)
1-step RWNN 89.2 (± 4.3) 77.6 (± 4.7) 71.4 (± 1.8) 74.7 (± 3.3) 56.7 (± 5.2)
2-step RWNN 88.1 (± 4.8) 76.9 (± 4.6) 73.0 (± 2.0) 74.1 (± 2.8) 57.4 (± 4.9)
3-step RWNN 88.6 (± 4.1) 77.4 (± 4.9) 73.9 (± 1.3) 74.3 (± 3.3) 57.6 (± 6.3)
Model name IMDB-BINARY IMDB-MULTI REDDIT-BINARY REDDIT-MULTI-5K COLLAB
SP 57.7 (± 4.1) 39.8 (± 3.7) 89.0 (± 1.0) 51.1 (± 2.2) 79.9 (± 2.7)
GR 63.3 (± 2.7) 39.6 (± 3.0) 76.6 (± 3.3) 38.1 (± 2.3) 71.1 (± 1.4)
WL 72.8 (± 4.5) 51.2 (± 6.5) 74.9 (± 1.8) 49.6 (± 2.0) 78.0 (± 2.0)
DGCNN 69.2 (± 3.0) 45.6 (± 3.4) 87.8 (± 2.5) 49.2 (± 1.2) 71.2 (± 1.9)
DiffPool 68.4 (± 3.3) 45.6 (± 3.4) 89.1 (± 1.6) 53.8 (± 1.4) 68.9 (± 2.0)
ECC 67.7 (± 2.8) 43.5 (± 3.1) OOR OOR OOR
GIN 71.2 (± 3.9) 48.5 (± 3.3) 89.9 (± 1.9) 56.1 (± 1.7) 75.6 (± 2.3)
GraphSAGE 68.8 (± 4.5) 47.6 (± 3.5) 84.3 (± 1.9) 50.0 (± 1.3) 73.9 (± 1.7)
1-step RWNN 70.8 (± 4.8) 47.8 (± 3.8) 90.4 (± 1.9) 51.7 (± 1.5) 71.7 (± 2.1)
2-step RWNN 70.6 (± 4.4) 48.8 (± 2.9) 90.3 (± 1.8) 51.7 (± 1.4) 71.3 (± 2.1)
3-step RWNN 70.7 (± 3.9) 47.8 (± 3.5) 89.7 (± 1.2) 53.4 (± 1.6) 71.9 (± 2.5)

Cite

Please cite our paper if you use this code:

@inproceedings{nikolentzos2020random,
  title={Random Walk Graph Neural Networks},
  author={Nikolentzos, Giannis and Vazirgiannis, Michalis},
  booktitle={Proceedings of the 34th Conference on Neural Information Processing Systems},
  pages={16211--16222},
  year={2020}
}
Owner
Giannis Nikolentzos
Giannis Nikolentzos
Automatic Idiomatic Expression Detection

IDentifier of Idiomatic Expressions via Semantic Compatibility (DISC) An Idiomatic identifier that detects the presence and span of idiomatic expressi

5 Jun 09, 2022
用opencv的dnn模块做yolov5目标检测,包含C++和Python两个版本的程序

yolov5-dnn-cpp-py yolov5s,yolov5l,yolov5m,yolov5x的onnx文件在百度云盘下载, 链接:https://pan.baidu.com/s/1d67LUlOoPFQy0MV39gpJiw 提取码:bayj python版本的主程序是main_yolov5.

365 Jan 04, 2023
This is the official implementation of our proposed SwinMR

SwinMR This is the official implementation of our proposed SwinMR: Swin Transformer for Fast MRI Please cite: @article{huang2022swin, title={Swi

A Yang Lab (led by Dr Guang Yang) 27 Nov 17, 2022
MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.

Front-end View Backend View Table of Contents Description Prerequisites Running Basic Information Measurements User Interface Feedback and usage Descr

Center for Computational Imaging and Personalized Diagnostics 58 Dec 02, 2022
Custom Implementation of Non-Deep Networks

ParNet Custom Implementation of Non-deep Networks arXiv:2110.07641 Ankit Goyal, Alexey Bochkovskiy, Jia Deng, Vladlen Koltun Official Repository https

Pritama Kumar Nayak 20 May 27, 2022
Boostcamp CV Serving For Python

Boostcamp-CV-Serving Prerequisites MySQL GCP Cloud Storage GCP key file Sentry Streamlit Cloud Secrets: .streamlit/secrets.toml #DO NOT SHARE THIS I

Jungwon Seo 19 Feb 22, 2022
《Dual-Resolution Correspondence Network》(NeurIPS 2020)

Dual-Resolution Correspondence Network Dual-Resolution Correspondence Network, NeurIPS 2020 Dependency All dependencies are included in asset/dualrcne

Active Vision Laboratory 45 Nov 21, 2022
Cross Quality LFW: A database for Analyzing Cross-Resolution Image Face Recognition in Unconstrained Environments

Cross-Quality Labeled Faces in the Wild (XQLFW) Here, we release the database, evaluation protocol and code for the following paper: Cross Quality LFW

Martin Knoche 10 Dec 12, 2022
Simple codebase for flexible neural net training

neural-modular Simple codebase for flexible neural net training. Allows for seamless exchange of models, dataset, and optimizers. Uses hydra for confi

Jannik Kossen 7 Apr 05, 2022
Implementation of Ag-Grid component for Streamlit

streamlit-aggrid AgGrid is an awsome grid for web frontend. More information in https://www.ag-grid.com/. Consider purchasing a license from Ag-Grid i

Pablo Fonseca 556 Dec 31, 2022
Two-stage CenterNet

Probabilistic two-stage detection Two-stage object detectors that use class-agnostic one-stage detectors as the proposal network. Probabilistic two-st

Xingyi Zhou 1.1k Jan 03, 2023
SeqAttack: a framework for adversarial attacks on token classification models

A framework for adversarial attacks against token classification models

Walter 23 Nov 25, 2022
Differential Privacy for Heterogeneous Federated Learning : Utility & Privacy tradeoffs

Differential Privacy for Heterogeneous Federated Learning : Utility & Privacy tradeoffs In this work, we propose an algorithm DP-SCAFFOLD(-warm), whic

19 Nov 10, 2022
SegNet including indices pooling for Semantic Segmentation with tensorflow and keras

SegNet SegNet is a model of semantic segmentation based on Fully Comvolutional Network. This repository contains the implementation of learning and te

Yuta Kamikawa 172 Dec 23, 2022
NVIDIA Merlin is an open source library providing end-to-end GPU-accelerated recommender systems, from feature engineering and preprocessing to training deep learning models and running inference in production.

NVIDIA Merlin NVIDIA Merlin is an open source library designed to accelerate recommender systems on NVIDIA’s GPUs. It enables data scientists, machine

419 Jan 03, 2023
Just-Now - This Is Just Now Login Friendlist Cloner Tools

JUST NOW LOGIN FRIENDLIST CLONER TOOLS Install $ apt update $ apt upgrade $ apt

MAHADI HASAN AFRIDI 21 Mar 09, 2022
Dynamic Environments with Deformable Objects (DEDO)

DEDO - Dynamic Environments with Deformable Objects DEDO is a lightweight and customizable suite of environments with deformable objects. It is aimed

Rika 32 Dec 22, 2022
Code for EmBERT, a transformer model for embodied, language-guided visual task completion.

Code for EmBERT, a transformer model for embodied, language-guided visual task completion.

41 Jan 03, 2023
Fast convergence of detr with spatially modulated co-attention

Fast convergence of detr with spatially modulated co-attention Usage There are no extra compiled components in SMCA DETR and package dependencies are

peng gao 135 Dec 07, 2022
Official repository for Fourier model that can generate periodic signals

Conditional Generation of Periodic Signals with Fourier-Based Decoder Jiyoung Lee, Wonjae Kim, Daehoon Gwak, Edward Choi This repository provides offi

8 May 25, 2022