Doing bayesian data analysis - Python/PyMC3 versions of the programs described in Doing bayesian data analysis by John K. Kruschke

Overview

Doing_bayesian_data_analysis

Gitter

This repository contains the Python version of the R programs described in the great book Doing bayesian data analysis (first edition) by John K. Kruschke (AKA the puppy book).

All the code is adapted from the Kruschke's book, except hpd.py that is taken (without modifications) from the PyMC project.

The name of the programs are the same used in the book, except they begin with a number indicating the chapter. All programs are written in Python and instead of BUGS/JAGS the PyMC3 module is used.

Thanks to Brian Naughton the code is also available as an IPython notebook

Second edition

If you are interested on the PyMC3 code for the second edition of Doing bayesian data analysis, please check this Repository.

Owner
Osvaldo Martin
Osvaldo Martin
3D visualization of scientific data in Python

Mayavi: 3D visualization of scientific data in Python Mayavi docs: http://docs.enthought.com/mayavi/mayavi/ TVTK docs: http://docs.enthought.com/mayav

Enthought, Inc. 1.1k Jan 06, 2023
Metaflow is a human-friendly Python/R library that helps scientists and engineers build and manage real-life data science projects

Metaflow Metaflow is a human-friendly Python/R library that helps scientists and engineers build and manage real-life data science projects. Metaflow

Netflix, Inc. 6.3k Jan 03, 2023
Karate Club: An API Oriented Open-source Python Framework for Unsupervised Learning on Graphs (CIKM 2020)

Karate Club is an unsupervised machine learning extension library for NetworkX. Please look at the Documentation, relevant Paper, Promo Video, and Ext

Benedek Rozemberczki 1.8k Dec 31, 2022
Mathics is a general-purpose computer algebra system (CAS). It is an open-source alternative to Mathematica

Mathics is a general-purpose computer algebra system (CAS). It is an open-source alternative to Mathematica. It is free both as in "free beer" and as in "freedom".

Mathics 535 Jan 04, 2023
CKAN is an open-source DMS (data management system) for powering data hubs and data portals. CKAN makes it easy to publish, share and use data. It powers catalog.data.gov, open.canada.ca/data, data.humdata.org among many other sites.

CKAN: The Open Source Data Portal Software CKAN is the world’s leading open-source data portal platform. CKAN makes it easy to publish, share and work

ckan 3.6k Dec 27, 2022
CONCEPT (COsmological N-body CodE in PyThon) is a free and open-source simulation code for cosmological structure formation

CONCEPT (COsmological N-body CodE in PyThon) is a free and open-source simulation code for cosmological structure formation. The code should run on any Linux system, from massively parallel computer

Jeppe Dakin 62 Dec 08, 2022
CoCalc: Collaborative Calculation in the Cloud

logo CoCalc Collaborative Calculation and Data Science CoCalc is a virtual online workspace for calculations, research, collaboration and authoring do

SageMath, Inc. 1k Dec 29, 2022
A simple computer program made with Python on the brachistochrone curve.

Brachistochrone-curve This is a simple computer program made with Python on the brachistochrone curve. I decided to write it after a physics lesson on

Diego Romeo 1 Dec 16, 2021
A framework for feature exploration in Data Science

Beehive A framework for feature exploration in Data Science Background What do we do when we finish one episode of feature exploration in a jupyter no

Steven IJ 1 Jan 03, 2022
Zipline, a Pythonic Algorithmic Trading Library

Zipline is a Pythonic algorithmic trading library. It is an event-driven system for backtesting. Zipline is currently used in production as the backte

Quantopian, Inc. 15.7k Jan 07, 2023
Datamol is a python library to work with molecules

Datamol is a python library to work with molecules. It's a layer built on top of RDKit and aims to be as light as possible.

datamol 276 Dec 19, 2022
Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Aesara

PyMC3 is a Python package for Bayesian statistical modeling and Probabilistic Machine Learning focusing on advanced Markov chain Monte Carlo (MCMC) an

PyMC 7.2k Dec 30, 2022
Doing bayesian data analysis - Python/PyMC3 versions of the programs described in Doing bayesian data analysis by John K. Kruschke

Doing_bayesian_data_analysis This repository contains the Python version of the R programs described in the great book Doing bayesian data analysis (f

Osvaldo Martin 851 Dec 27, 2022
An open-source application for biological image analysis

CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure

CellProfiler 734 Jan 08, 2023
CS 506 - Computational Tools for Data Science

CS 506 - Computational Tools for Data Science Code, slides, and notes for Boston University CS506 Fall 2021 The Final Project Repository can be found

Lance Galletti 14 Mar 23, 2022
Algorithms covered in the Bioinformatics Course part of the Cambridge Computer Science Tripos

Bioinformatics This is a repository of all the algorithms covered in the Bioinformatics Course part of the Cambridge Computer Science Tripos Algorithm

16 Jun 30, 2022
PsychoPy is an open-source package for creating experiments in behavioral science.

PsychoPy is an open-source package for creating experiments in behavioral science. It aims to provide a single package that is: precise enoug

PsychoPy 1.3k Dec 31, 2022
A mathematica expression evaluator with PokemonTypes

A simple mathematical expression evaluator that uses Pokemon types to replace symbols.

Arnav Jindal 2 Nov 14, 2021
SCICO is a Python package for solving the inverse problems that arise in scientific imaging applications.

Scientific Computational Imaging COde (SCICO) SCICO is a Python package for solving the inverse problems that arise in scientific imaging applications

Los Alamos National Laboratory 37 Dec 21, 2022
Open Delmic Microscope Software

Odemis Odemis (Open Delmic Microscope Software) is the open-source microscopy software of Delmic B.V. Odemis is used for controlling microscopes of De

Delmic 32 Dec 14, 2022