Artisan Visual scope for coffee roasters WARNING: pre-release builds may not work. Use at your own risk. Summary Artisan is a software that helps coff

an interactive explorer for single-cell transcriptomics data cellxgene (pronounced "cell-by-gene") is an interactive data explorer for single-cell tra

Manim is an engine for precise programatic animations, designed for creating explanatory math videos. Note, there are two versions of manim. This repo

AntiderivativeEstimator Program that estimates antiderivatives utilising Maclaurin series. Setup: Needs Python 3 and Git installed and added to PATH.

Odemis Odemis (Open Delmic Microscope Software) is the open-source microscopy software of Delmic B.V. Odemis is used for controlling microscopes of De

PyMC3 is a Python package for Bayesian statistical modeling and Probabilistic Machine Learning focusing on advanced Markov chain Monte Carlo (MCMC) an

Metaflow Metaflow is a human-friendly Python/R library that helps scientists and engineers build and manage real-life data science projects. Metaflow

PsychoPy is an open-source package for creating experiments in behavioral science. It aims to provide a single package that is: precise enoug

Mathics is a general-purpose computer algebra system (CAS). It is an open-source alternative to Mathematica. It is free both as in "free beer" and as in "freedom".

SymPy See the AUTHORS file for the list of authors. And many more people helped on the SymPy mailing list, reported bugs, helped organize SymPy's part

SeqLike - flexible biological sequence objects in Python Introduction A single object API that makes working with biological sequences in Python more

Cookiecutter Data Science A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. Project homepage

PennyLane is a cross-platform Python library for differentiable programming of quantum computers. Train a quantum computer the same way as a neural network.

Zipline is a Pythonic algorithmic trading library. It is an event-driven system for backtesting. Zipline is currently used in production as the backte

Python Data Science Handbook This repository contains the entire Python Data Science Handbook, in the form of (free!) Jupyter notebooks. How to Use th

MOSAIC: A modular single-molecule analysis interface MOSAIC is a single molecule analysis toolbox that automatically decodes multi-state nanopore data

Doing_bayesian_data_analysis This repository contains the Python version of the R programs described in the great book Doing bayesian data analysis (f

CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure

Bioinformatics This is a repository of all the algorithms covered in the Bioinformatics Course part of the Cambridge Computer Science Tripos Algorithm

Collection of useful code related to biological analysis. Much of this is discussed with examples at Blue collar bioinformatics. All code, images and