Modular analysis tools for neurophysiology data

Last update: Dec 22, 2021

Related tags

Data Analysis neuroanalysis

Overview

Neuroanalysis

Modular and interactive tools for analysis of neurophysiology data, with emphasis on patch-clamp electrophysiology.

Functions for running common analysis algorithms
- Synaptic/calcium event detection and characterization
- Synaptic release modeling
- VC and CC spike detection and characterization
- VC and CC test pulse analysis
- Basic signal processing (filtering, baseline removal, etc.)
Data abstraction layer to allow adapting new data formats (see neuroanalysis/data.py)
Re-usable user interface elements for implementing common analysis tasks

Status

This project is early in development and does not yet have a stable API. Issues and pull requests are accepted (see CONTRIBUTING.md), but may not be reviewed or accepted on any fixed schedule.

Owner

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

GitHub Repository

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