A Python package to request and process seismic waveform data from Hi-net.

Overview

HinetPy is a Python package to simplify tedious data request, download and format conversion tasks related to NIED Hi-net.

NIED Hi-net | Source Code | Documentation | 中文文档

Features

  • Request continuous and event waveform data from Hi-net
  • Select Hi-net/F-net stations inside a box or circular region
  • Convert waveform data from win32 format to SAC format
  • Extract instrumental response as SAC polezero file
  • Multithreads downloading and conversion to speedup

A simple example

Here is an example showing how to use HinetPy to request continuous waveform data from Hi-net, convert the data into SAC format, and extract instrumental responses as SAC polezero files.

#!/usr/bin/env python
# -*- coding: utf-8 -*-

from HinetPy import Client, win32

# You need a Hi-net account to access the data
client = Client("username", "password")

# Let's try to request 20-minute data starting at 2010-01-01T00:00(GMT+0900)
# of the Hi-net network (with an internal network code of '0101')
data, ctable = client.get_continuous_waveform("0101", "201001010000", 20)

# The request and download process usually takes a few minutes
# waiting for data request ...
# waiting for data download ...

# Now you can see the data and corresponding channel table in your working directory
# waveform data (in win32 format) : 0101_201001010000_20.cnt
# channel table (plaintext file)  : 0101_20100101.ch

# Let's convert data from win32 format to SAC format
win32.extract_sac(data, ctable)

# Let's extract instrument response as PZ files from the channel table file
win32.extract_sacpz(ctable)

# Now you can see several SAC and SAC_PZ files in your working directory

# N.NGUH.E.SAC  N.NGUH.U.SAC  N.NNMH.N.SAC
# N.NGUH.N.SAC  N.NNMH.E.SAC  N.NNMH.U.SAC
# ...
# N.NGUH.E.SAC_PZ  N.NGUH.U.SAC_PZ  N.NNMH.N.SAC_PZ
# N.NGUH.N.SAC_PZ  N.NNMH.E.SAC_PZ  N.NNMH.U.SAC_PZ
# ...

Citation

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License

This project is licensed under the terms of the MIT license.

Comments
  • Connecting Hinet time out over a period of time

    Connecting Hinet time out over a period of time

    Hi Dongdong, Great work for HinetPy. Some error occurred when I request data continuously over a period of time, the source codes are attached. Look forwarding to you help.

    Traceback (most recent call last):
      File "/usr/local/pyenv/versions/anaconda3-4.3.1/lib/python3.6/site-packages/requests/packages/urllib3/connection.py", line 138, in _new_conn
        (self.host, self.port), self.timeout, **extra_kw)
      File "/usr/local/pyenv/versions/anaconda3-4.3.1/lib/python3.6/site-packages/requests/packages/urllib3/util/connection.py", line 98, in create_connection
        raise err
      File "/usr/local/pyenv/versions/anaconda3-4.3.1/lib/python3.6/site-packages/requests/packages/urllib3/util/connection.py", line 88, in create_connection
        sock.connect(sa)
    socket.timeout: timed out
    
    During handling of the above exception, another exception occurred:
    
    Traceback (most recent call last):
      File "/usr/local/pyenv/versions/anaconda3-4.3.1/lib/python3.6/site-packages/requests/packages/urllib3/connectionpool.py", line 594, in urlopen
        chunked=chunked)
      File "/usr/local/pyenv/versions/anaconda3-4.3.1/lib/python3.6/site-packages/requests/packages/urllib3/connectionpool.py", line 350, in _make_request
        self._validate_conn(conn)
      File "/usr/local/pyenv/versions/anaconda3-4.3.1/lib/python3.6/site-packages/requests/packages/urllib3/connectionpool.py", line 835, in _validate_conn
        conn.connect()
      File "/usr/local/pyenv/versions/anaconda3-4.3.1/lib/python3.6/site-packages/requests/packages/urllib3/connection.py", line 281, in connect
        conn = self._new_conn()
      File "/usr/local/pyenv/versions/anaconda3-4.3.1/lib/python3.6/site-packages/requests/packages/urllib3/connection.py", line 143, in _new_conn
        (self.host, self.timeout))
    requests.packages.urllib3.exceptions.ConnectTimeoutError: (<requests.packages.urllib3.connection.VerifiedHTTPSConnection object at 0x7f0318697be0>, 'Connection to hinetwww11.bosai.go.jp timed out. (connect timeout=60)')
    
    #!/bin/env python
    import datetime
    import os
    import glob
    from HinetPy import Client
    from HinetPy import win32
    
    timeb = datetime.datetime(2016,11,8,23,30,0)
    timee = datetime.datetime(2017,1,1,0,0,0)
    span = 30
    nowtime = timeb
    clnt = Client('xxxxxx', 'xxxxxxx')
    
    while nowtime < timee:
        dirname = nowtime.strftime("%Y%m%d%H%M")
        print(dirname)
        if os.path.isdir(dirname) and glob.glob(os.path.join(dirname, "*.SAC")):
            pass
        else:
            data, ctable = clnt.get_waveform('0101', dirname, span, outdir=dirname)
            win32.extract_sac(data, ctable, outdir=dirname)
            win32.extract_pz(ctable, outdir=dirname)
        nowtime += datetime.timedelta(minutes=span)
    
    opened by xumi1993 7
  • Download data size limit for F-net updated

    Download data size limit for F-net updated

    The limitation of download data size for F-net data is not the same with Hi-net, that is:

    • max size of download data is 50 MB (< 55MB actually).

    Thus I updated this criteria for F-net (0103,0103A).

    Please merge it if it would be useful for HinetPy.

    opened by mnagaso 4
  • List Selected Stations with Longitude / Latitude

    List Selected Stations with Longitude / Latitude

    Background

    • A function to return stations with Lon/Lat is helpful to plot them in a map.
    • Client.get_seleced_stations() only returns the number of selected stations, not the station info.
    • Here, add Client.list_selected_stations() to show selected stations with Lon/Lat data!

    Feature

    • Client.list_selected_stations() returns a dict containing stations as keys.
    • For each value, a dict with 'longitude' and 'latitude' as keys.
    • len() returns the number of selected stations, the same feature to Client.get_seleced_stations().

    Example

    >>> client = Client("username", "password")
    >>> stations = client.list_selected_stations(code='0101', parser='lxml')
    >>> stations
    {'N.TRGH': {'longitude': 136.0303, 'latitude': 35.639},
     'N.MIKH': {'longitude': 135.8694, 'latitude': 35.5587},
     ...,
     'N.NAKH': {'longitude': 132.9524, 'latitude': 33.0754}}
    
    >>> len(stations)
    23
    >>> [*stations.keys()]
    ['N.TRGH',
     'N.MIKH',
      ...,
     'N.NAKH']
    
    >>> print(*stations['N.MIKH'].values())
    135.8694 35.5587
    

    Note

    • Need to install beautifulsoup4 to run this function (I did not touch setup.py and requirements.txt)
    • Can run faster if the parser lxml is installed, as the default parser. If not, html.parser is used in BeautifulSoup.
    • This func can be renamed to get_seleced_stations()?
    opened by yasuit21 4
  • Download fail client.py

    Download fail client.py

    Hi!

    I tried to download continuous waveform data, but I got "ERROR: Data request fails after 3 retries.", and I got no data (.cnt) and channel table (.ch) in the working directory. Below is what I got:

    >>> from HinetPy import Client, win32
    >>> client = Client('MYUSENAME', 'MYPASSWORD')
    >>> data, ctable = client.get_continuous_waveform('0101', '201604160100', 5)
    [2019-07-31 11:12:29] INFO: 2016-04-16 01:00 ~5
    [2019-07-31 11:12:29] INFO: [1/1] => 2016-04-16 01:00 ~5
    [2019-07-31 11:13:03] ERROR: Data request fails after 3 retries.
    [2019-07-31 11:13:03] ERROR: Fail to request some data. Skipped.
    

    It seems that the request has successfully been sent to Hi-net, and I could manually (click and save) download the data via Status / Download page at Hi-net website https://hinetwww11.bosai.go.jp/auth/download/cont/cont_status.php?LANG=en, but it should be not convenient for me when downloading hours and days of long data...

    It would be a great help if I could get any hints to solve this problem... Thanks!

    • OS: macOS
    • Python version: Python 3.6.1
    • HinetPy version: 0.6.3

    HinetPy_error_report_190731113842

    opened by rokuwaki 3
  • Bump codecov/codecov-action from 1 to 2.0.1

    Bump codecov/codecov-action from 1 to 2.0.1

    Bumps codecov/codecov-action from 1 to 2.0.1.

    Release notes

    Sourced from codecov/codecov-action's releases.

    v2.0.1

    Fixes

    • #424 fix: Issue in building all deep dependencies

    v2.0.0

    On February 1, 2022, the v1 uploader will be full sunset and no longer function. This is due to the deprecation of the underlying bash uploader. This version uses the new uploader.

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    Breaking Changes

    • Multiple fields have not been transferred from the bash uploader or have been deprecated. Notably many of the functionalities and gcov_ arguments have been removed. Please check the documentation for the full list.

    Features

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    • (Enterprise only) slug allows specifying the repository slug manually
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    v1.5.2

    1.5.2

    Fixes

    • fix: Import version properly as string not object

    v1.5.1

    1.5.1

    Fixes

    • #320 doc: add github actions badge
    • #336 Update bash uploader to 1.0.3
    • #339 fix: Add action version

    Dependencies

    • #302 Bump @​typescript-eslint/eslint-plugin from 4.22.0 to 4.22.1
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    • #304 Bump ts-jest from 26.5.5 to 26.5.6
    • #309 Bump lodash from 4.17.19 to 4.17.21
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    • #311 Bump @​actions/github from 4.0.0 to 5.0.0
    • #314 Bump eslint from 7.25.0 to 7.27.0
    • #315 Bump @​actions/core from 1.2.7 to 1.3.0
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    • #319 Bump jest-junit from 12.0.0 to 12.1.0
    • #321 Bump typescript from 4.2.4 to 4.3.2
    • #323 Bump ws from 7.3.1 to 7.4.6
    • #331 Bump eslint from 7.27.0 to 7.28.0
    • #332 Bump @​actions/exec from 1.0.4 to 1.1.0
    • #333 Bump @​typescript-eslint/parser from 4.25.0 to 4.26.1

    ... (truncated)

    Changelog

    Sourced from codecov/codecov-action's changelog.

    2.0.1

    Fixes

    • #424 fix: Issue in building all deep dependencies

    2.0.0

    On February 1, 2022, the v1 uploader will be full sunset and no longer function. This is due to the deprecation of the underlying bash uploader. This version uses the new uploader.

    The v2 Action downloads, verifies, and runs the Codecov binary.

    Breaking Changes

    • Multiple fields have not been transferred from the bash uploader or have been deprecated. Notably many of the functionalities and gcov_ arguments have been removed. Please check the documentation for the full list.

    Features

    • dry-run argument allows Codecov flow without uploading reports to Codecov
    • (Enterprise only) slug allows specifying the repository slug manually
    • (Enterprise only) url allows changing the upload host

    1.5.2

    Fixes

    • fix: Import version properly as string not object

    1.5.1

    Fixes

    • #320 doc: add github actions badge
    • #336 Update bash uploader to 1.0.3
    • #339 fix: Add action version

    Dependencies

    • #302 Bump @​typescript-eslint/eslint-plugin from 4.22.0 to 4.22.1
    • #303 Bump @​typescript-eslint/parser from 4.22.0 to 4.22.1
    • #304 Bump ts-jest from 26.5.5 to 26.5.6
    • #309 Bump lodash from 4.17.19 to 4.17.21
    • #310 Bump hosted-git-info from 2.8.8 to 2.8.9
    • #311 Bump @​actions/github from 4.0.0 to 5.0.0
    • #314 Bump eslint from 7.25.0 to 7.27.0
    • #315 Bump @​actions/core from 1.2.7 to 1.3.0
    • #316 Bump @​typescript-eslint/parser from 4.22.1 to 4.25.0
    • #317 Bump @​typescript-eslint/eslint-plugin from 4.22.1 to 4.25.0
    • #319 Bump jest-junit from 12.0.0 to 12.1.0
    • #321 Bump typescript from 4.2.4 to 4.3.2
    • #323 Bump ws from 7.3.1 to 7.4.6
    • #331 Bump eslint from 7.27.0 to 7.28.0
    • #332 Bump @​actions/exec from 1.0.4 to 1.1.0
    • #333 Bump @​typescript-eslint/parser from 4.25.0 to 4.26.1
    • #334 Bump @​typescript-eslint/eslint-plugin from 4.25.0 to 4.26.1
    • #335 Bump @​actions/core from 1.3.0 to 1.4.0
    • #337 Bump glob-parent from 5.1.1 to 5.1.2

    ... (truncated)

    Commits
    • c585afe Merge pull request #424 from codecov/2.0.1-fix-deps
    • 852cffb Remove dist/coverage
    • d910efb Update CHANGELOG
    • 439c1e5 Remove coverage folder
    • fc5d663 fix: Hack to force asn1.js
    • 5c832ae Force the dep
    • 71fa76a fix: Add job to test no deps
    • 672fbdc Merge pull request #421 from codecov/dependabot/npm_and_yarn/types/node-16.3.3
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  • Select stations

    Select stations

    Hi,

    The circular region selection of stations appears to be broken. The example here:

    >>> client.select_stations('0101', latitude=30, longitude139,
    ...                        minradius=0, maxradius=2)
    

    produces the following error stack:

    Traceback (most recent call last):
      File "download.py", line 285, in <module>
        hinet.download_event_data(events, args.maxradius)
      File "download.py", line 247, in download_event_data
        fn = self.event_to_stations(event, maxradius)
      File "download.py", line 225, in event_to_stations
        minradius=0, maxradius=2)
      File "/home/marius/.local/lib/python3.5/site-packages/HinetPy/client.py", line 1049, in select_stations
        stations_at_server = self.get_station_list(code)
      File "/home/marius/.local/lib/python3.5/site-packages/HinetPy/client.py", line 903, in get_station_list
        latitude, longitude, elevation = items[7], items[8], items[12]
    IndexError: list index out of range
    

    Also, there is a typo in the example (longitude139)

    bug 
    opened by HerrMuellerluedenscheid 1
  • Unable to download focal mechanism catalog

    Unable to download focal mechanism catalog

    >>> from HinetPy imprt Client
    >>> from datetime import datetime
    >>> client = Client("username", "password")
    >>> startdate = datetime(2010, 1, 1)
    >>> client.get_focalmechanism(startdate, 5)
    'focal_20100101_5.txt'
    

    "Argument error" in the downloaded file.

    opened by seisman 1
  • directory name can not contain underscore?

    directory name can not contain underscore?

    When using rdhinet.py to extract SAC files from cnt files, if the directory name contain underscore, it may be in a infinite loop and the computer seems to be dead.

    This issue is reported by Jiayuan Yao.

    The script seems to have a huge bug, I will check it ASAP.

    bug 
    opened by seisman 1
  • Bump pypa/gh-action-pypi-publish from 1.6.1 to 1.6.4

    Bump pypa/gh-action-pypi-publish from 1.6.1 to 1.6.4

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    v1.6.4

    oh, boi! again?

    This is the last one tonight, promise! It fixes this embarrassing bug that was actually caught by the CI but got overlooked due to the lack of sleep. TL;DR GH passed $HOME from the external env into the container and that tricked the Python's site module to think that the home directory is elsewhere, adding non-existent paths to the env vars. See #115.

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    v1.6.2

    What's Fixed

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    Internal Maintenance Improvements

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  • Bump pypa/gh-action-pypi-publish from 1.5.1 to 1.6.1

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    v1.6.1

    What's happened?!

    There was a sneaky bug in v1.6.0 which caused Twine to be outside the import path in the Python runtime. It is fixed in v1.6.1 by updating $PYTHONPATH to point to a correct location of the user-global site-packages/ directory.

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    v1.6.0

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  • Bump peaceiris/actions-gh-pages from 3.8.0 to 3.9.0

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    dependencies 
    opened by dependabot[bot] 0
  • Hi-net continuous waveform data header and PZ Response files

    Hi-net continuous waveform data header and PZ Response files

    I have downloaded continuous waveform data of two Hi-net stations using HinetPy. But the problem is when I open the header of any sac file in SAC, there is no network name in it and this in turn is creating problem in station pair making in MSNoise. Furthermore, as I am a newbie in this field, I am also struggling with the response files of the stations. I have PZ response files but I want the response files to be in Station XML. I am unable to understand how to convert these PZ files to Station XML. I am hoping to get some help from here.

    opened by Faisal-Umer 4
Releases(0.7.1)
Owner
Dongdong Tian
Associate Professor in Geophysics at China University of Geosciences. Core developer of @GenericMappingTools.
Dongdong Tian
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