Networkx with neo4j back-end

Overview
  1. Dump networkx graph into nodes/relations TSV
from neo4jnx.tsv import graph_to_tsv
g = pklload('indranet_dir_graph.pkl')
graph_to_tsv(g, 'docker/nodes.tsv.gz', 'docker/edges.tsv.gz')
  1. Run Docker build for neo4j which loads dumped TSVs
cd docker
docker build --tag neo4j_test:latest .
  1. Launch Docker container
docker run -d -it -p 7475:7474 -p 7688:7687 neo4j_test:latest
  1. Instantiate Neo4jDiGraph object with config matching the launched container
from neo4jnx import Neo4jDiGraph
g = Neo4jDiGraph(neo4j_url='neo4j://localhost:7688',
                 neo4j_auth=('neo4j', 'admin'),
                 property_loaders={'statements': json.loads,
                                   'belief': float, 'weight': float,
                                   'z_score': float, 'corr_weight': float})
Owner
Benjamin M. Gyori
Sysbio & AI researcher. Human-machine collaboration, probabilistic modeling, knowledge assembly, text mining @ indra.bio, dialogue.bio, emmaa.indra.bio.
Benjamin M. Gyori
A Python utility belt containing simple tools, a stdlib like feel, and extra batteries. Hashing, Caching, Timing, Progress, and more made easy!

Ubelt is a small library of robust, tested, documented, and simple functions that extend the Python standard library. It has a flat API that all behav

Jon Crall 638 Dec 13, 2022
✨ Un DNS Resolver totalement fait en Python par moi, et en français

DNS Resolver ❗ Un DNS Resolver totalement fait en Python par moi, et en français. 🔮 Grâce a une adresse (url) vous pourrez avoir l'ip ainsi que le DN

MrGabin 3 Jun 06, 2021
A monitor than send discord webhook when a specific monitored product has stock in your nearby pickup stores.

Welcome to Apple In-store Monitor This is a monitor that are not fully scaled, and might still have some bugs.

5 Jun 16, 2022
Python based tool to extract forensic info from EventTranscript.db (Windows Diagnostic Data)

EventTranscriptParser EventTranscriptParser is python based tool to extract forensically useful details from EventTranscript.db (Windows Diagnostic Da

P. Abhiram Kumar 24 Nov 18, 2022
A small python tool to get relevant values from SRI invoices

SriInvoiceProcessing A small python tool to get relevant values from SRI invoices Some useful info to run the tool Login into your SRI account and ret

Wladymir Brborich 2 Jan 07, 2022
RapidFuzz is a fast string matching library for Python and C++

RapidFuzz is a fast string matching library for Python and C++, which is using the string similarity calculations from FuzzyWuzzy

Max Bachmann 1.7k Jan 04, 2023
An URL checking python module

An URL checking python module

Fayas Noushad 6 Aug 10, 2022
Produce a simulate-able SDF of an arbitrary mesh with convex decomposition.

Mesh-to-SDF converter Given a (potentially nasty, nonconvex) mesh, automatically creates an SDF file that describes that object. The visual geometry i

Greg Izatt 22 Nov 23, 2022
A Python script that transcript Arcaea chart file (.aff file) into AutoJS touchscreen script which automatically plays the Arcaea chart

ArcaeaAutoplay (AutoJS Version) A Python script that transcript Arcaea chart file (.aff file) into AutoJS touchscreen script which automatically plays

7 Dec 03, 2021
Entropy-controlled contexts in Python

Python module ordered ordered module is the opposite to random - it maintains order in the program. import random x = 5 def increase(): global x

HyperC 36 Nov 03, 2022
Make your functions return something meaningful, typed, and safe!

Make your functions return something meaningful, typed, and safe! Features Brings functional programming to Python land Provides a bunch of primitives

dry-python 2.6k Jan 09, 2023
Small Python script to parse endlessh's output and print some neat statistics

endlessh_parser endlessh_parser is a small Python script that parses endlessh's output and prints some neat statistics about it Usage Install all the

ManicRobot 1 Oct 18, 2021
Tools to connect to and interact with the Mila cluster

milatools The milatools package provides the mila command, which is meant to help with connecting to and interacting with the Mila cluster. Install Re

Mila 32 Dec 01, 2022
DUQ is a python package for working with physical Dimensions, Units, and Quantities.

DUQ is a python package for working with physical Dimensions, Units, and Quantities.

2 Nov 02, 2022
Link-tree - Script that iterate over the links found in each page

link-tree Script that iterate over the links found in each page, recursively fin

Rodrigo Stramantinoli 2 Jan 05, 2022
A set of Python scripts to surpass human limits in accomplishing simple tasks.

Human benchmark fooler Summary A set of Python scripts with Selenium designed to surpass human limits in accomplishing simple tasks available on https

Bohdan Dudchenko 3 Feb 10, 2022
Monte Carlo simulation of 3G rules

mc3g Monte Carlo simulation of 3G rules This project contains the Python code to do simulations of events according to the 3G rule (in German: "Geimpf

Jan Christoph Terasa 4 Nov 01, 2021
Easy compression and extraction for any compression or archival format.

Tzar: Tar, Zip, Anything Really Easy compression and extraction for any compression or archival format. Usage/Examples tzar compress large-dir compres

DanielVZ 37 Nov 02, 2022
Course-parsing - Parsing Course Info for NIT Kurukshetra

Parsing Course Info for NIT Kurukshetra Overview This repository houses code for

Saksham Mittal 3 Feb 03, 2022
A Python package implementing various colour checker detection algorithms and related utilities.

A Python package implementing various colour checker detection algorithms and related utilities.

colour-science 147 Dec 29, 2022