Our implementation of Gillespie's Stochastic Simulation Algorithm (SSA)

Related tags

Algorithmsssa
Overview

SSA

Our implementation of Gillespie's Stochastic Simulation Algorithm (SSA)

Requirements

  • python >=3.7
  • numpy
  • pandas
  • matplotlib
  • pyyaml

Command line usage

The main program kinetics.py can be used as below

python kinetics.py -f 

For more help

python kinetics.py --h

Input File

A sample input file can be found inside /src directory.

License

GNU GPL V3

Owner
Anoop Lab
The major focus of our research group the study of early events using computational chemistry, and developing methods for this study.
Anoop Lab
RRT algorithm and its optimization

RRT-Algorithm-Visualisation This is a project that aims to develop upon the RRT

Sarannya Bhattacharya 7 Mar 06, 2022
Wordle-solver - A program that solves a Wordle using a simple algorithm

Wordle Solver A program that solves a Wordle using a simple algorithm. To see it

Luc Bouchard 3 Feb 13, 2022
FingerPy is a algorithm to measure, analyse and monitor heart-beat using only a video of the user's finger on a mobile cellphone camera.

FingerPy is a algorithm using python, scipy and fft to measure, analyse and monitor heart-beat using only a video of the user's finger on a m

Thiago S. Brasil 37 Oct 21, 2022
Fedlearn algorithm toolkit for researchers

Fedlearn algorithm toolkit for researchers

89 Nov 14, 2022
Minimal examples of data structures and algorithms in Python

Pythonic Data Structures and Algorithms Minimal and clean example implementations of data structures and algorithms in Python 3. Contributing Thanks f

Keon 22k Jan 09, 2023
The test data, code and detailed description of the AW t-SNE algorithm

AW-t-SNE The test data, code and result of the AW t-SNE algorithm Structure of the folder Datasets: This folder contains two datasets, the MNIST datas

1 Mar 09, 2022
Primedice like provably fair algorithm

Primedice like provably fair algorithm

Ryu juheon 3 Dec 02, 2022
Search algorithm implementations meant for teaching

Search-py A collection of search algorithms for teaching and experimenting. Non-adversarial Search There’s a heavy separation of concerns which leads

Dietrich Daroch 5 Mar 07, 2022
frePPLe - open source supply chain planning

frePPLe Open source supply chain planning FrePPLe is an easy-to-use and easy-to-implement open source advanced planning and scheduling tool for manufa

frePPLe 385 Jan 06, 2023
Python sample codes for robotics algorithms.

PythonRobotics Python codes for robotics algorithm. Table of Contents What is this? Requirements Documentation How to use Localization Extended Kalman

Atsushi Sakai 17.2k Jan 01, 2023
8 Puzzle with A* , Greedy & BFS Search in Python

8_Puzzle 8 Puzzle with A* , Greedy & BFS Search in Python Python Install Python from here. Pip Install pip from here. How to run? πŸš€ Install 8_Puzzle

I3L4CK H4CK3l2 1 Jan 30, 2022
This repository is not maintained

This repository is no longer maintained, but is being kept around for educational purposes. If you want a more complete algorithms repo check out: htt

Nic Young 2.8k Dec 30, 2022
Pathfinding visualizer in pygame: A*

Pathfinding Visualizer A* What is this A* algorithm ? Simply put, it is an algorithm that aims to find the shortest possible path between two location

0 Feb 26, 2022
Exam Schedule Generator using Genetic Algorithm

Exam Schedule Generator using Genetic Algorithm Requirements Use any kind of crossover Choose any justifiable rate of mutation Use roulette wheel sele

Sana Khan 1 Jan 12, 2022
🌟 Python algorithm team note for programming competition or coding test

🌟 Python algorithm team note for programming competition or coding test

Seung Hoon Lee 3 Feb 25, 2022
A tictactoe where you never win, implemented using minimax algorithm

Unbeatable_TicTacToe A tictactoe where you never win, implemented using minimax algorithm Requirements Make sure you have the pygame module along with

Jessica Jolly 3 Jul 28, 2022
This project is an implementation of a simple K-means algorithm

Simple-Kmeans-Clustering-Algorithm Abstract K-means is a centroid-based algorithm, or a distance-based algorithm, where we calculate the distances to

Saman Khamesian 7 Aug 09, 2022
QDax is a tool to accelerate Quality-Diveristy (QD) algorithms through hardware accelerators and massive parallelism

QDax: Accelerated Quality-Diversity QDax is a tool to accelerate Quality-Diveristy (QD) algorithms through hardware accelerators and massive paralleli

Adaptive and Intelligent Robotics Lab 183 Dec 30, 2022
Planning Algorithms in AI and Robotics. MSc course at Skoltech Data Science program

Planning Algorithms in AI and Robotics course T2 2021-22 The Planning Algorithms in AI and Robotics course at Skoltech, MS in Data Science, during T2,

Mobile Robotics Lab. at Skoltech 6 Sep 21, 2022
Algorithms written in different programming languages

Data Structures and Algorithms Clean example implementations of data structures and algorithms written in different languages. List of implementations

Zoran Pandovski 1.3k Jan 03, 2023