A script written in Python that returns a consensus string and profile matrix of a given DNA string(s) in FASTA format.

Overview

Consensus_and_Profile_Matrix

A script written in Python that returns a consensus string and profile matrix of a given DNA string(s) in FASTA format.

How to use

Open the file and rename the "cons.fasta" to your input DNA strings FASTA file. OR Rename your file to cons.fasta and place it beside the script.

Output

The code will return the consensus string and save the profile matrix to a csv file.

This script was written to solve a problem on rosalind.info: https://rosalind.info/problems/cons/

Owner
Zain
Data Analyst
Zain
Code Release for Learning to Adapt to Evolving Domains

EAML Code release for "Learning to Adapt to Evolving Domains" (NeurIPS 2020) Prerequisites PyTorch = 0.4.0 (with suitable CUDA and CuDNN version) tor

23 Dec 07, 2022
Code for "OctField: Hierarchical Implicit Functions for 3D Modeling (NeurIPS 2021)"

OctField(Jittor): Hierarchical Implicit Functions for 3D Modeling Introduction This repository is code release for OctField: Hierarchical Implicit Fun

55 Dec 08, 2022
Exploring Simple Siamese Representation Learning

G-SimSiam A PyTorch implementation which refers to repo for the paper Exploring Simple Siamese Representation Learning by Xinlei Chen & Kaiming He Add

zhuyun 1 Dec 19, 2021
The official code of "SCROLLS: Standardized CompaRison Over Long Language Sequences".

SCROLLS This repository contains the official code of the paper: "SCROLLS: Standardized CompaRison Over Long Language Sequences". Links Official Websi

TAU NLP Group 39 Dec 23, 2022
Python 3 module to print out long strings of text with intervals of time inbetween

Python-Fastprint Python 3 module to print out long strings of text with intervals of time inbetween Install: pip install fastprint Sync Usage: from fa

Kainoa Kanter 2 Jun 27, 2022
True Few-Shot Learning with Language Models

This codebase supports using language models (LMs) for true few-shot learning: learning to perform a task using a limited number of examples from a single task distribution.

Ethan Perez 124 Jan 04, 2023
Code accompanying our NeurIPS 2021 traffic4cast challenge

Traffic forecasting on traffic movie snippets This repo contains all code to reproduce our approach to the IARAI Traffic4cast 2021 challenge. In the c

Nina Wiedemann 2 Aug 09, 2022
This repository includes code of my study about Asynchronous in Frequency domain of GAN images.

Exploring the Asynchronous of the Frequency Spectra of GAN-generated Facial Images Binh M. Le & Simon S. Woo, "Exploring the Asynchronous of the Frequ

4 Aug 06, 2022
Select, weight and analyze complex sample data

Sample Analytics In large-scale surveys, often complex random mechanisms are used to select samples. Estimates derived from such samples must reflect

samplics 37 Dec 15, 2022
Code for paper "Extract, Denoise and Enforce: Evaluating and Improving Concept Preservation for Text-to-Text Generation" EMNLP 2021

The repo provides the code for paper "Extract, Denoise and Enforce: Evaluating and Improving Concept Preservation for Text-to-Text Generation" EMNLP 2

Yuning Mao 18 May 24, 2022
The repo of Feedback Networks, CVPR17

Feedback Networks http://feedbacknet.stanford.edu/ Paper: Feedback Networks, CVPR 2017. Amir R. Zamir*,Te-Lin Wu*, Lin Sun, William B. Shen, Bertram E

Stanford Vision and Learning Lab 87 Nov 19, 2022
BBB streaming without Xorg and Pulseaudio and Chromium and other nonsense (heavily WIP)

BBB Streamer NG? Makes a conference like this... ...streamable like this! I also recorded a small video showing the basic features: https://www.youtub

Lukas Schauer 60 Oct 21, 2022
Image based Human Fall Detection

Here I integrated the YOLOv5 object detection algorithm with my own created dataset which consists of human activity images to achieve low cost, high accuracy, and real-time computing requirements

UTTEJ KUMAR 12 Dec 11, 2022
REGTR: End-to-end Point Cloud Correspondences with Transformers

REGTR: End-to-end Point Cloud Correspondences with Transformers This repository contains the source code for REGTR. REGTR utilizes multiple transforme

Zi Jian Yew 108 Dec 17, 2022
A light weight data augmentation tool for training CNNs and Viola Jones detectors

hey-daug A light weight data augmentation tool for training CNNs and Viola Jones detectors (Haar Cascades). This tool inflates your data by up to six

Jaiyam Sharma 2 Nov 23, 2019
Rule based classification A hotel s customers dataset

Rule-based-classification-A-hotel-s-customers-dataset- Aim: Categorize new customers by segment and predict how much revenue they can generate This re

Şebnem 4 Jan 02, 2022
Official code for the paper "Why Do Self-Supervised Models Transfer? Investigating the Impact of Invariance on Downstream Tasks".

Why Do Self-Supervised Models Transfer? Investigating the Impact of Invariance on Downstream Tasks This repository contains the official code for the

Linus Ericsson 11 Dec 16, 2022
Robust Lane Detection via Expanded Self Attention (WACV 2022)

Robust Lane Detection via Expanded Self Attention (WACV 2022) Minhyeok Lee, Junhyeop Lee, Dogyoon Lee, Woojin Kim, Sangwon Hwang, Sangyoun Lee Overvie

Min Hyeok Lee 18 Nov 12, 2022
Multi-Anchor Active Domain Adaptation for Semantic Segmentation (ICCV 2021 Oral)

Multi-Anchor Active Domain Adaptation for Semantic Segmentation Munan Ning*, Donghuan Lu*, Dong Wei†, Cheng Bian, Chenglang Yuan, Shuang Yu, Kai Ma, Y

Munan Ning 36 Dec 07, 2022
Demos of essentia classifiers hosted on replicate.ai

essentia-replicate-demos Demos of Essentia models hosted on replicate.ai's MTG site. The models Check our site for a complete list of the models avail

Music Technology Group - Universitat Pompeu Fabra 12 Nov 14, 2022