Sequence clustering and database creation using mmseqs, from local fasta files

Overview

Intallation

# Create and active a virtual conda venv
$ conda env create --file env.yml
# For activating the environment use
$ conda activate cavDb
# For deactivating the environment use
$ conda deactivate

Running CavDB

#Activate the conda venv
$ conda activate cavDB
#for merging multiple fasta files
$ python main.py --fasta_files_list ./data/un_fasta.fasta ./data/otro_fasta.fasta
#for creating a db from a fasta file
$ python main.py --fasta_db_file ./data/QUERY.fasta
Owner
Ana Julia Velez Rueda
Ana Julia Velez Rueda
Shutdown Time - A pretty much useless application that allows you to shut your computer down in x time with a GUI.

A pretty much useless application that allows you to shut your computer down in x time with a GUI. Should eventually support Windows (all versions), Linux (v2.0+), MacOS (probably with Linux, idk)

1 Nov 08, 2022
Never see escaped bytes in output.

Uniout It makes Python print the object representation in readable chars instead of the escaped string. Example from pprint import pprint lang

Mosky Liu 156 Oct 21, 2022
Jogo em redes similar ao clássico pedra papel e tesoura

Batalha Tática Tecnologias de Redes de Computadores-A-N-JOGOS DIGITAIS Professor Fabio Henrique Cabrini Alunos: Eric Henrique de Oliveira Silva - RA 1

Eric Henrique de Oliveira Silva 1 Dec 01, 2021
My solutions for Advent of Code 2021 🌟🎄

🌟 Advent of Code 2021 🎄 My solutions for Advent of Code 2021. About · What is Advent of Code? · Contents · Usage · Table of puzzles (TODO: add final

Amanda P. Pinha 2 Dec 05, 2022
Prometheus exporter for Spigot accounts

SpigotExporter Prometheus exporter for Spigot accounts What it provides SpigotExporter will output metrics for each of your plugins and a cumulative d

Jacob Bashista 5 Dec 20, 2021
rTorrent Crash Prevention

rTorrent Disk Checker This program is capable of the following when: - a torrent is added by any program (autodl-irssi, RSS Downloader et

16 Dec 14, 2022
Metal Gear Rising: Revengeance's DAT archive (un)packer

DOOMP Metal Gear Rising: Revengeance's DAT archive (un)packer

Christopher Holzmann Pérez 5 Sep 02, 2022
Source-o-grapher is a tool built with the aim to investigate software resilience aspects of Open Source Software (OSS) projects.

Source-o-grapher is a tool built with the aim to investigate software resilience aspects of Open Source Software (OSS) projects.

Aristotle University 5 Jun 28, 2022
This code can help you with auto update for-TV-advertisements in the store.

Auto-update-files-for-TV-advertisements-in-the-store This code can help you with auto update for-TV-advertisements in the store. It was write for Rasp

Max 2 Feb 20, 2022
Learn Python Regular Expressions step by step from beginner to advanced levels

Python re(gex)? Learn Python Regular Expressions step by step from beginner to advanced levels with hundreds of examples and exercises The book also i

Sundeep Agarwal 1.3k Dec 28, 2022
Simple Denial of Service Program yang di bikin menggunakan bahasa pemograman Python,

Peringatan Tujuan kami share code Indo-DoS hanya untuk bertujuan edukasi / pembelajaran! Dilarang memperjual belikan source ini / memperjual-belikan s

SonLyte 8 Nov 07, 2021
🇮🇳 A Indian Flag Animation Project Made With Python

🇮🇳 A Indian Flag Animation Project Made With Python

MuFaz-TG 2 Oct 21, 2022
Script to quickly get the metrics from Github repos to analyze.

commit-prefix-analysis Script to quickly get the metrics from Github repos to analyze. Setup Install the Github CLI. You'll know its working when runn

David Carpenter 1 Dec 17, 2022
Rotazioni: a linear programming workout split optimizer

Rotazioni: a linear programming workout split optimizer Dependencies Dependencies for the frontend and backend are respectively listed in client/packa

Marco 3 Oct 13, 2022
Simple Assembler with python

Assembler with python converts assembly source code to machine code Requirements Python 3 🐍 Usage python main.py [source] [output] [source] : Path t

Amir mohammad 1 Dec 24, 2021
Opendrop - An open Apple AirDrop implementation written in Python

OpenDrop: an Open Source AirDrop Implementation OpenDrop is a command-line tool that allows sharing files between devices directly over Wi-Fi. Its uni

Secure Mobile Networking Lab 7.5k Jan 03, 2023
A Red Team tool for exfiltrating sensitive data from Jira tickets.

Jir-thief This Module will connect to Jira's API using an access token, export to a word .doc, and download the Jira issues that the target has access

Antonio Piazza 82 Dec 12, 2022
Um Script De Mensagem anonimas Para linux e Termux Feito em python

Um Script De Mensagem anonimas Para linux e Termux Feito em python feito em um celular

6 Sep 09, 2021
Retrying is an Apache 2.0 licensed general-purpose retrying library, written in Python, to simplify the task of adding retry behavior to just about anything.

Retrying Retrying is an Apache 2.0 licensed general-purpose retrying library, written in Python, to simplify the task of adding retry behavior to just

Ray Holder 1.9k Dec 29, 2022
This program goes thru reddit, finds the most mentioned tickers and uses Vader SentimentIntensityAnalyzer to calculate the ticker compound value.

This program goes thru reddit, finds the most mentioned tickers and uses Vader SentimentIntensityAnalyzer to calculate the ticker compound value.

195 Dec 13, 2022