Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images

Overview

napari-3d-ortho-viewer

License PyPI Python Version tests codecov napari hub

Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images


This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

This plugin is heavily inspired by ortho-view-napari.

Check out this post on image.sc (https://forum.image.sc/t/napari-visualization-in-3-planes/57768) for more infos about multiview support in napari.

This viewer has some additional features:

  • double click to jump to specific position in all slices
  • additional 3d view of 3d stack with lines or planes indicating current position

Installation

You can install napari-3d-ortho-viewer via pip:

pip install napari-3d-ortho-viewer

To install latest development version :

pip install git+https://github.com/gatoniel/napari-3d-ortho-viewer.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "napari-3d-ortho-viewer" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.

Owner
niklas netter
I started studies in physics at Philipps University Marburg in April 2016. Currently I am working at Drescher Lab in the field of image analysis and biophysics.
niklas netter
Make your master artistic punk avatar through machine learning world famous paintings

Master-art-punk Make your master artistic punk avatar through machine learning world famous paintings. 通过机器学习世界名画制作属于你的大师级艺术朋克头像 Nowadays, NFT is beco

蒋虎成 23 Jan 04, 2022
利用近邻法的弱点实现图片缩小后变成另一张图

这是我一个视频的配套代码。 视频是:利用近邻法的弱点实现图片缩小后变成另一张图 https://www.bilibili.com/video/BV1Lf4y1r7dZ 配套代码中,仅generate.py是核心文件,其余的图片神马的,都是赠品。 这个核心文件利用了近邻法缩放的弱点,可以将图a的像素按

偶尔有点小迷糊 182 Dec 19, 2022
API to help generating QR-code for ZATCA's e-invoice known as Fatoora with any programming language

You can try it @ api-fatoora api-fatoora API to help generating QR-code for ZATCA's e-invoice known as Fatoora with any programming language Disclaime

نافع الهلالي 12 Oct 05, 2022
Sample data for the napari image viewer.

napari-demo-data Sample data for the napari image viewer. This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugi

Genevieve Buckley 1 Nov 08, 2021
Fill holes in binary 2D & 3D images fast.

Fill holes in binary 2D & 3D images fast.

11 Dec 09, 2022
Convert a DOS Punk image to text

DOS Punk Text Inspired by MAX CAPACITY's DOS Punks & the amazing DOS Punk community. DOS Punk Text is a Python 3 script that renders a DOS Punk image

4 Jan 13, 2022
Paper backup of files using QR codes

Generate paper backups for Linux. Currently command-linux Linux only. Takes any file, and outputs a "paper backup": a printable black-and-white pdf fu

Zachary Vance 27 Dec 28, 2022
Bringing vtk.js into Dash and Python

Dash VTK Dash VTK lets you integrate the vtk.js visualization pipeline directly into your Dash app. It is powered by react-vtk-js. Docs Demo Explorer

Plotly 88 Nov 29, 2022
粉專/IG圖文加工器

粉專/IG圖文加工器 介紹 給PS智障(ex:我)使用,用於產生圖文 腳本省去每次重複步驟 可載入圖片(方形,請先處理過,歡迎PR) 圖片簡易套用濾鏡 可將圖片切片 要求 Python 版本 3.9 安裝 安裝最新 python pip3 install -r requirement.txt 效果

Louis Tang 7 Aug 10, 2022
A tool and a library for SVG path data transformations.

SVG path data transformation toolkit A tool and a library for SVG path data transformations. Currently it supports a translation and a scaling. Usage

Igor Mikushkin 2 Mar 07, 2022
An executor that performs standard pre-processing and normalization on images.

An executor that performs standard pre-processing and normalization on images.

Jina AI 6 Jun 30, 2022
An example which streams RGB-D images over spout.

Spout RGB-D Example An example which streams RGB-D images over spout with visiongraph. Due to the spout dependency this currently only works on Window

Florian Bruggisser 4 Nov 14, 2022
Django helper application to easily and non-destructively crop arbitrarily large images in admin and frontend.

django-image-cropping django-image-cropping is an app for cropping uploaded images via Django's admin backend using Jcrop. Screenshot: django-image-cr

Jonas und der Wolf GmbH 546 Jan 03, 2023
A pure python implementation of the GIMP XCF image format. Use this to interact with GIMP image formats

Pure Python implementation of the GIMP image formats (.xcf projects as well as brushes, patterns, etc)

FHPyhtonUtils 8 Dec 30, 2022
MetaStalk is a tool that can be used to generate graphs from the metadata of JPEG, TIFF, and HEIC images

MetaStalk About MetaStalk is a tool that can be used to generate graphs from the metadata of JPEG, TIFF, and HEIC images, which are tested. More forma

Cyb3r Jak3 1 Jul 05, 2021
A collection of python scripts which help you programatically create PNGs or GIFs

A collection of python scripts which help you programatically create PNGs or GIFs and their Metadata in bulk with custom rarity rates, upload them to OpenSea & list them for sale.

Tom 30 Dec 24, 2022
Image Processing - Make noise images clean

影像處理-影像降躁化(去躁化) (Image Processing - Make Noise Images Clean) 得力於電腦效能的大幅提升以及GPU的平行運算架構,讓我們能夠更快速且有效地訓練AI,並將AI技術應用於不同領域。本篇將帶給大家的是 「將深度學習應用於影像處理中的影像降躁化 」,

2 Aug 04, 2022
Tweet2Image - Convert tweets to Instagram-friendly images.

Convert tweets to Instagram-friendly images. How to use If you want to use this repository as a submodule, don't forget to put the fonts d

Janu Lingeswaran 1 Mar 11, 2022
A Python package implementing various HDRI / Radiance image processing algorithms.

Colour - HDRI A Python package implementing various HDRI / Radiance image processing algorithms. It is open source and freely available under the New

colour-science 111 Dec 06, 2022
📷 Python package and CLI utility to create photo mosaics.

📷 Python package and CLI utility to create photo mosaics.

Loic Coyle 7 Oct 29, 2022