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elasticity_related

elasticity_related

 
 

plot_code

plot_code

 
 

pressure_curves

pressure_curves

 
 

scripts

scripts

 
 

sound_output

sound_output

 
 

valve_generator

valve_generator

 
 

CirculationModel.cpp

CirculationModel.cpp

 
 

CirculationModel.h

CirculationModel.h

 
 

CirculationModel_RV_PA.cpp

CirculationModel_RV_PA.cpp

 
 

CirculationModel_RV_PA.h

CirculationModel_RV_PA.h

 
 

CirculationModel_aorta.cpp

CirculationModel_aorta.cpp

 
 

CirculationModel_aorta.h

CirculationModel_aorta.h

 
 

CirculationModel_la.cpp

CirculationModel_la.cpp

 
 

CirculationModel_la.h

CirculationModel_la.h

 
 

CirculationModel_with_lv.cpp

CirculationModel_with_lv.cpp

 
 

CirculationModel_with_lv.h

CirculationModel_with_lv.h

 
 

FeedbackForcer.cpp

FeedbackForcer.cpp

 
 

FeedbackForcer.h

FeedbackForcer.h

 
 

FourierBodyForce.cpp

FourierBodyForce.cpp

 
 

FourierBodyForce.h

FourierBodyForce.h

 
 

Makefile

Makefile

 
 

README.md

README.md

 
 

boundary_condition_util.cpp

boundary_condition_util.cpp

 
 

boundary_condition_util.h

boundary_condition_util.h

 
 

compute_flux_visit.py

compute_flux_visit.py

 
 

convert_visit_to_lines3d.py

convert_visit_to_lines3d.py

 
 

convert_xyz_to_force_data.py

convert_xyz_to_force_data.py

 
 

convert_xyz_to_matlab_text_data.py

convert_xyz_to_matlab_text_data.py

 
 

export_lagrangian_visit_to_lines3d.py

export_lagrangian_visit_to_lines3d.py

 
 

fix_visit_files.py

fix_visit_files.py

 
 

flux_movie.py

flux_movie.py

 
 

get_base_name.py

get_base_name.py

 
 

kill_all_mpi.sh

kill_all_mpi.sh

 
 

license.txt

license.txt

 
 

main.cpp

main.cpp

 
 

main_aorta.cpp

main_aorta.cpp

 
 

main_rv_pa.cpp

main_rv_pa.cpp

 
 

main_with_lv.cpp

main_with_lv.cpp

 
 

make_movie_generic.py

make_movie_generic.py

 
 

make_three_lag_views_movie.py

make_three_lag_views_movie.py

 
 

make_three_panels_particles.py

make_three_panels_particles.py

 
 

make_three_slice_movie.py

make_three_slice_movie.py

 
 

make_three_slice_movie_256_at_278_output.py

make_three_slice_movie_256_at_278_output.py

 
 

make_three_slice_movie_256_at_278_output_ALT.py

make_three_slice_movie_256_at_278_output_ALT.py

 
 

make_three_vorticity_slice.py

make_three_vorticity_slice.py

 
 

pnpoly.cpp

pnpoly.cpp

 
 

pnpoly.h

pnpoly.h

 
 

run_cycle_N128_PERIODIC.sh

run_cycle_N128_PERIODIC.sh

 
 

run_parallel_movie.py

run_parallel_movie.py

 
 

run_watchdog.sh

run_watchdog.sh

 
 

timing.h

timing.h

 
 

watchdog_job_restart.py

watchdog_job_restart.py

 
 

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Project Title

Mitral Valve

Getting Started

Repo for code associated with Modeling the Mitral Valve.

See https://arxiv.org/abs/1902.00018 for preprint, https://search.proquest.com/docview/1966554975 for thesis.

Run valve_generator/generate_valve.m to build model valves.

Write to me for additional instructions. This repo was written with the intention of my personal use, but I will clean code and write manuals if interest is expressed.

Prerequisites

The fluid solver used is IBAMR.

Customizations are in the following branch: https://github.com/alexkaiser/IBAMR/tree/prescribed_motion

About

Repo for code associated with Modeling the Mitral Valve.

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