jaxfg - Factor graph-based nonlinear optimization library for JAX.

Overview

jaxfg

Factor graph-based nonlinear optimization library for JAX.

Applications include sensor fusion, control, planning, SLAM. Borrows heavily from a wide set of existing libraries, including: Ceres Solver, g2o, GTSAM, minisam, SwiftFusion.

Features:

  • Autodiff-powered (sparse) Jacobians.
  • Automatic batching of factor computations.
  • Out-of-the-box support for optimization on SO(2), SO(3), SE(2), and SE(3).
  • 100% implemented in Python!

Current limitations:

  • JIT compilation adds significant startup overhead. This could likely be optimized (for example, by specifying more analytical Jacobians) but is mostly unavoidable with JAX/XLA. Limits applications for systems that are online or require dynamic graph alterations.
  • Python >=3.7 only, due to features needed for generic types.

Installation

scikit-sparse require SuiteSparse:

sudo apt update
sudo apt install -y libsuitesparse-dev

Then, from your environment of choice:

git clone https://github.com/brentyi/jaxfg.git
cd jaxfg
pip install -e .

Example scripts

Toy pose graph optimization:

python scripts/pose_graph_simple.py

Pose graph optimization from .g2o files:

python scripts/pose_graph_g2o.py --help

To-do

  • Preliminary graph, variable, factor interfaces
  • Real vector variable types
  • Refactor into package
  • Nonlinear optimization for MAP inference
    • Conjugate gradient linear solver
    • CHOLMOD linear solver
      • Basic implementation. JIT-able, but no vmap, pmap, or autodiff support.
    • Gauss-Newton implementation
    • Termination criteria
    • Damped least squares
    • Dogleg
    • Inexact Newton steps
    • Revisit termination criteria
    • Reduce redundant code
    • Robust losses
  • Marginalization
    • Working prototype using sksparse/CHOLMOD
    • JAX implementation?
  • Validate g2o example
  • Performance
    • More intentional JIT compilation
    • Re-implement parallel factor computation
    • Vectorized linearization
    • Basic (Jacobi) CGLS preconditioning
  • Manifold optimization (mostly offloaded to jaxlie)
    • Basic interface
    • Manifold optimization on SO2
    • Manifold optimization on SE2
    • Manifold optimization on SO3
    • Manifold optimization on SE3
  • Usability + code health (low priority)
    • Basic cleanup/refactor
      • Better parallel factor interface
      • Separate out utils, lie group helpers
      • Put things in folders
    • Resolve typing errors
    • Cleanup/refactor (more)
    • Package cleanup: dependencies, etc
    • Add CI:
      • mypy
      • lint
      • build
      • coverage
    • More comprehensive tests
    • Clean up docstrings
Owner
Brent Yi
Brent Yi
A high-performance topological machine learning toolbox in Python

giotto-tda is a high-performance topological machine learning toolbox in Python built on top of scikit-learn and is distributed under the G

giotto.ai 632 Dec 29, 2022
A collection of machine learning examples and tutorials.

machine_learning_examples A collection of machine learning examples and tutorials.

LazyProgrammer.me 7.1k Jan 01, 2023
CyLP is a Python interface to COIN-OR’s Linear and mixed-integer program solvers (CLP, CBC, and CGL)

CyLP CyLP is a Python interface to COIN-OR’s Linear and mixed-integer program solvers (CLP, CBC, and CGL). CyLP’s unique feature is that you can use i

COIN-OR Foundation 161 Dec 14, 2022
Python ML pipeline that showcases mltrace functionality.

mltrace tutorial Date: October 2021 This tutorial builds a training and testing pipeline for a toy ML prediction problem: to predict whether a passeng

Log Labs 28 Nov 09, 2022
Real-time stream processing for python

Streamz Streamz helps you build pipelines to manage continuous streams of data. It is simple to use in simple cases, but also supports complex pipelin

Python Streamz 1.1k Dec 28, 2022
Python-based implementations of algorithms for learning on imbalanced data.

ND DIAL: Imbalanced Algorithms Minimalist Python-based implementations of algorithms for imbalanced learning. Includes deep and representational learn

DIAL | Notre Dame 220 Dec 13, 2022
This repository has datasets containing information of Uber pickups in NYC from April 2014 to September 2014 and January to June 2015. data Analysis , virtualization and some insights are gathered here

uber-pickups-analysis Data Source: https://www.kaggle.com/fivethirtyeight/uber-pickups-in-new-york-city Information about data set The dataset contain

B DEVA DEEKSHITH 1 Nov 03, 2021
Simple data balancing baselines for worst-group-accuracy benchmarks.

BalancingGroups Code to replicate the experimental results from Simple data balancing baselines achieve competitive worst-group-accuracy. Replicating

Facebook Research 29 Dec 02, 2022
Automatic extraction of relevant features from time series:

tsfresh This repository contains the TSFRESH python package. The abbreviation stands for "Time Series Feature extraction based on scalable hypothesis

Blue Yonder GmbH 7k Jan 06, 2023
2D fluid simulation implementation of Jos Stam paper on real-time fuild dynamics, including some suggested extensions.

Fluid Simulation Usage Download this repo and store it in your computer. Open a terminal and go to the root directory of this folder. Make sure you ha

Mariana Ávalos Arce 5 Dec 02, 2022
A collection of neat and practical data science and machine learning projects

Data Science A collection of neat and practical data science and machine learning projects Explore the docs » Report Bug · Request Feature Table of Co

Will Fong 2 Dec 10, 2021
TIANCHI Purchase Redemption Forecast Challenge

TIANCHI Purchase Redemption Forecast Challenge

Haorui HE 4 Aug 26, 2022
A Python package for time series classification

pyts: a Python package for time series classification pyts is a Python package for time series classification. It aims to make time series classificat

Johann Faouzi 1.4k Jan 01, 2023
Lightweight Machine Learning Experiment Logging 📖

Simple logging of statistics, model checkpoints, plots and other objects for your Machine Learning Experiments (MLE). Furthermore, the MLELogger comes with smooth multi-seed result aggregation and co

Robert Lange 65 Dec 08, 2022
An open-source library of algorithms to analyse time series in GPU and CPU.

An open-source library of algorithms to analyse time series in GPU and CPU.

Shapelets 216 Dec 30, 2022
hgboost - Hyperoptimized Gradient Boosting

hgboost is short for Hyperoptimized Gradient Boosting and is a python package for hyperparameter optimization for xgboost, catboost and lightboost using cross-validation, and evaluating the results o

Erdogan Taskesen 34 Jan 03, 2023
决策树分类与回归模型的实现和可视化

DecisionTree 决策树分类与回归模型,以及可视化 DecisionTree ID3 C4.5 CART 分类 回归 决策树绘制 分类树 回归树 调参 剪枝 ID3 ID3决策树是最朴素的决策树分类器: 无剪枝 只支持离散属性 采用信息增益准则 在data.py中,我们记录了一个小的西瓜数据

Welt Xing 10 Oct 22, 2022
A library of extension and helper modules for Python's data analysis and machine learning libraries.

Mlxtend (machine learning extensions) is a Python library of useful tools for the day-to-day data science tasks. Sebastian Raschka 2014-2021 Links Doc

Sebastian Raschka 4.2k Dec 29, 2022
This project impelemented for midterm of the Machine Learning #Zoomcamp #Alexey Grigorev

MLProject_01 This project impelemented for midterm of the Machine Learning #Zoomcamp #Alexey Grigorev Context Dataset English question data set file F

Hadi Nakhi 1 Dec 18, 2021
Used Logistic Regression, Random Forest, and XGBoost to predict the outcome of Search & Destroy games from the Call of Duty World League for the 2018 and 2019 seasons.

Call of Duty World League: Search & Destroy Outcome Predictions Growing up as an avid Call of Duty player, I was always curious about what factors led

Brett Vogelsang 2 Jan 18, 2022