Installation

1. Download miniconda3 if not already installed
   1. You can check by running typing conda in command prompt.
2. Use conda to create an environment running python=3.5
   1. conda create --name clinic python=3.5
3. Activate the conda environment and install pip
   1. conda activate clinic
   2. conda install pip
4. cd into the project folder and install requirements
   1. pip install -r requirements.txt
   2. pip install biopython-1.76-cp35-cp35m-win_amd64

Usage

Start the clinic conda environment and cd into the src folder. Then run:

python main.py

There should now be a grad_cam.jpg file in the current directory.

Vision Transformer (ViT)

ViT Attention Visualization

Transformers with Genomic Data